Pairwise Alignments

Query, 317 a.a., aliphatic sulfonate ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 327 a.a., ABC transporter substrate-binding protein from Herbaspirillum seropedicae SmR1

 Score =  219 bits (559), Expect = 5e-62
 Identities = 123/310 (39%), Positives = 172/310 (55%), Gaps = 1/310 (0%)

Query: 3   AITRRALSAGLIAAVALSVLPFAAQAAEELKIGYQKTGLP-VIARQQGVIEKALEAKGVK 61
           AI R +  A     +AL   P  AQ  + L+IGYQK     V+ +  G +EK L+  GV+
Sbjct: 16  AIQRLSAIALGALTIALGASPVQAQETKLLRIGYQKAANTLVLLKAHGTLEKRLQPLGVE 75

Query: 62  VSWVEFTAGPPLVEALNVGSINVGWTGDAPPIFGQAAGSAIVYVAALPSNGKGEAIFTKP 121
           V W EF AGP L+EALNVGS++ G+ G+APP+F QAAG+  VY A        E +  + 
Sbjct: 76  VKWAEFAAGPQLLEALNVGSVDFGYVGEAPPVFAQAAGADFVYTAYEIPTPDAEGLLVQK 135

Query: 122 ESGIKSVADLKGKKVGVGKGTSAHNLLVAALEKNGLKLSDIDVTYLSPADAAAAFASDKI 181
            S IKSVA+LKGKK+   KG+  H L+VA L+K GL+ SDI   YL+PADA AAF    +
Sbjct: 136 NSPIKSVAELKGKKIAFNKGSDVHWLVVALLKKAGLQYSDIQPVYLAPADARAAFERGAV 195

Query: 182 DAWAVWDPFYAIAETRYKPVTLARTSDVLDVKTYFLANRDYAKSHADTINTNVGALGEAA 241
           DAWA+WDPF A AE +     LA     ++   +FL+ R +A  +       +  +    
Sbjct: 196 DAWAIWDPFQAAAEKQVGARRLATGVGAVNHHQFFLSARPFAAKNPQVEKILLEEISREG 255

Query: 242 KWSAANRDKVAAALHEVTGVPLEAQTLAANRSEFGITRIDDKIVASQQETADRFYRLGLI 301
           +W   +  + AA L  + G+  +       R       +D +++A QQ+ AD FY L LI
Sbjct: 256 EWVRTHTAQAAAQLAPIQGLDADIIETGLKRYAHVYKPVDAQVLAEQQKIADAFYELKLI 315

Query: 302 PKQISIKDAV 311
           PK + + DAV
Sbjct: 316 PKPLKVSDAV 325