Pairwise Alignments

Query, 317 a.a., aliphatic sulfonate ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 325 a.a., ABC transporter substrate-binding protein from Herbaspirillum seropedicae SmR1

 Score =  226 bits (576), Expect = 6e-64
 Identities = 127/311 (40%), Positives = 180/311 (57%), Gaps = 7/311 (2%)

Query: 6   RRALSAGLI----AAVALSVLPFAAQAA--EELKIGYQKTGLPVIARQQGVIEKALEAKG 59
           RR L AG +    AA A + LP    AA   +L++GYQK  L +I R  GV+E+ L   G
Sbjct: 10  RRRLIAGAVTLGAAAAAGASLPAWVHAAAPRQLRVGYQKGALSLI-RAHGVLEQRLAPLG 68

Query: 60  VKVSWVEFTAGPPLVEALNVGSINVGWTGDAPPIFGQAAGSAIVYVAALPSNGKGEAIFT 119
             V WVEF+AGP  +EAL  GSI+ G  G+APPIF QAAG+ +VYV A       EA+  
Sbjct: 69  ATVKWVEFSAGPVQLEALGAGSIDFGDVGEAPPIFAQAAGTPLVYVGATVPRPYVEAVLV 128

Query: 120 KPESGIKSVADLKGKKVGVGKGTSAHNLLVAALEKNGLKLSDIDVTYLSPADAAAAFASD 179
           K +S ++    LKGK++ + KG++ H  LV  LEK+GLK  D+   +L+PADA AAF   
Sbjct: 129 KDDSELQRPQQLKGKRIALNKGSNVHYFLVKLLEKHGLKYGDVTPVWLAPADARAAFERG 188

Query: 180 KIDAWAVWDPFYAIAETRYKPVTLARTSDVLDVKTYFLANRDYAKSHADTINTNVGALGE 239
            +DAWA+W+P+ A A+   K   LA    V+  + Y+ + RDYA+ HAD +   +  LG+
Sbjct: 189 AVDAWAIWEPYLAAAQQGLKARILADADGVVKNRAYYFSTRDYARDHADLLRIALEELGK 248

Query: 240 AAKWSAANRDKVAAALHEVTGVPLEAQTLAANRSEFGITRIDDKIVASQQETADRFYRLG 299
              W+ A  D+ A+ L  + G+P     +   R  +G   I   I+  QQ+ AD F  L 
Sbjct: 249 IDAWAQARPDEYASELAGILGLPRSVLDVVVRRYHYGTLPITRAILDEQQQIADTFLDLR 308

Query: 300 LIPKQISIKDA 310
           LIP++IS+ +A
Sbjct: 309 LIPRKISLLEA 319