Pairwise Alignments

Query, 317 a.a., aliphatic sulfonate ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 328 a.a., ABC transporter substrate-binding protein from Herbaspirillum seropedicae SmR1

 Score =  205 bits (522), Expect = 1e-57
 Identities = 113/315 (35%), Positives = 174/315 (55%), Gaps = 5/315 (1%)

Query: 6   RRALSAGLIAAVALSVLPFA--AQAAEELKIGYQKTG-LPVIARQQGVIEKALEAKGVKV 62
           RR L A     +  ++ P +  AQ  + ++IGYQK+  L  I +  G +EK L   G K+
Sbjct: 11  RRLLHAATALGLGSALAPASVFAQGNKAIRIGYQKSSTLLTILKANGTLEKLLAPTGAKI 70

Query: 63  SWVEFTAGPPLVEALNVGSINVGW-TGDAPPIFGQAAGSAIVYVAALPSNGKGEAIFTKP 121
           SW EF +G PL+EALNVG +++     D  P+F QAAG+ + YVA    +   +AI  + 
Sbjct: 71  SWHEFASGLPLLEALNVGGVDLSADVADTVPVFAQAAGAKLAYVAQESPSPAAQAIVVRA 130

Query: 122 ESGIKSVADLKGKKVGVGKGTSAHNLLVAALEKNGLKLSDIDVTYLSPADAAAAFASDKI 181
           +S ++  +DLKGKK+ V K    H LL+A LEK GLK SD+D  YLSPAD  AAF    +
Sbjct: 131 DSVLRKASDLKGKKIAVTKAAGVHYLLIATLEKAGLKFSDVDAAYLSPADGRAAFERGSV 190

Query: 182 DAWAVWDPFYAIAETRYKPVTLARTSDVLDVKTYFLANRDYAKSHADTINTNVGALGEAA 241
           DAW  WDPF A  + + +   L+    V D + Y+LA+  +A++  + +      L +  
Sbjct: 191 DAWVTWDPFLAGVQRQSQVRILSDGRGVADYQRYYLASASFAQARPEVLRVVFDELQKTG 250

Query: 242 KWSAANRDKVAAALHEVTGVPLEAQTLAANRSEFGITRIDDKIVASQQETADRFYRLGLI 301
            W   +  + AA L  + G+  +   LA +R  + +  +  + +  QQ  AD F+  GL+
Sbjct: 251 HWVKQHPKEAAAFLAPLWGLDADTIELANSRRSYEVRAVRPEALGEQQRIADTFFAAGLL 310

Query: 302 PKQISIKD-AVWSGA 315
           P++I+  D A+W+ A
Sbjct: 311 PRKINTNDVAIWTAA 325