Pairwise Alignments

Query, 300 a.a., LysR family transcriptional regulator from Agrobacterium fabrum C58

Subject, 303 a.a., DNA-binding transcriptional activator GcvA (RefSeq) from Shewanella amazonensis SB2B

 Score =  169 bits (428), Expect = 7e-47
 Identities = 105/290 (36%), Positives = 158/290 (54%), Gaps = 3/290 (1%)

Query: 6   RLVPDIITLQAFECAARHGNFTRAAEELNLTQSAVSRQIGELEAQTGMQLFERIRRRVVL 65
           R +P +  ++AFE AARH +FTRAAEEL +TQ+AVS QI  LE   G++LF R  R ++L
Sbjct: 3   RRLPPLNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRKNRSLLL 62

Query: 66  SEAGRKFLPDVRRLLQQSEQLMVRAVSAGTSHASLSVATLPTFGSRWLMPRLSRFIDANP 125
           +E G+ +  D++ +  Q      R + A ++  SL+V+  P+F  +WL+PRL++F + NP
Sbjct: 63  TEEGQSYFLDIKDIFTQLSDATDRLL-ARSAIGSLTVSMSPSFAIQWLVPRLAKFSEKNP 121

Query: 126 DMTITIGSRSHPFDFDEEGFDLAIHYGQPIWAHGTCTFLCNEVIVPVASPALLR-RAGVN 184
           D+ + I +         +  D+AI+YGQ  W       L NEV++PV SP LL     + 
Sbjct: 122 DIDVRIKAVDSEEGSLTDDVDVAIYYGQGSWPGLRADKLRNEVLIPVCSPMLLNGHKPLE 181

Query: 185 RAQDLAGQPLLHVTTRPKLWTEWLEMNGVTADNAYQGSRFDQFSMIIEAAASGIGFALLP 244
              DL    LLH  +R   W  W    GVT  N  QG  F   S++++AAA G G AL  
Sbjct: 182 TPADLKHHTLLHDMSRHD-WQAWFRQCGVTDVNVNQGPIFSHSSLVLQAAAHGQGVALGY 240

Query: 245 RYLIEAELASSRLEIVFDIPLQTDKSYYVALPEGRQDNVLARAFQAWLLD 294
             L   ++ + RL + F   L +  +YY+   +   +     AF+ W+LD
Sbjct: 241 SVLARPDIKAGRLVVPFQEVLVSKDAYYLVCQQNHAELGKIVAFREWMLD 290