Pairwise Alignments

Query, 300 a.a., LysR family transcriptional regulator from Agrobacterium fabrum C58

Subject, 303 a.a., DNA-binding transcriptional activator GcvA (RefSeq) from Shewanella loihica PV-4

 Score =  166 bits (419), Expect = 8e-46
 Identities = 103/290 (35%), Positives = 158/290 (54%), Gaps = 3/290 (1%)

Query: 6   RLVPDIITLQAFECAARHGNFTRAAEELNLTQSAVSRQIGELEAQTGMQLFERIRRRVVL 65
           R +P +  ++AFE AARH +FTRAAEEL +TQ+AVS QI  LE   G++LF R  R ++L
Sbjct: 3   RRLPPLNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEYLGLKLFRRKNRSLLL 62

Query: 66  SEAGRKFLPDVRRLLQQSEQLMVRAVSAGTSHASLSVATLPTFGSRWLMPRLSRFIDANP 125
           +E G+ +  D++ +  Q      R + A ++  SL+V+T P+F  +WL+PRL+ F + NP
Sbjct: 63  TEEGQGYFLDIKDIFVQLADATDRLL-ARSAIGSLTVSTSPSFAIQWLVPRLANFSENNP 121

Query: 126 DMTITIGSRSHPFDFDEEGFDLAIHYGQPIWAHGTCTFLCNEVIVPVASPALLR-RAGVN 184
           D+ + I +         +  D+AI+YG   W       L NEV++PV SP LL     ++
Sbjct: 122 DIDVRIKAVDDETSSLTDDVDVAIYYGMGNWPGLRADKLRNEVLIPVCSPMLLSGPKPLS 181

Query: 185 RAQDLAGQPLLHVTTRPKLWTEWLEMNGVTADNAYQGSRFDQFSMIIEAAASGIGFALLP 244
           +  DL    LLH ++R   W  W    G+   N  QG  F   S++++AAA G G AL  
Sbjct: 182 QPSDLKHHTLLHDSSRHD-WQAWFRQCGINDINVNQGPIFSHSSLVLQAAAHGQGVALGY 240

Query: 245 RYLIEAELASSRLEIVFDIPLQTDKSYYVALPEGRQDNVLARAFQAWLLD 294
             L   ++ + RL   F   L +  +YY+   +   +     AF+ W+LD
Sbjct: 241 SVLARPDIKAGRLVCPFPEVLVSKNAYYLVCQQNHAEIGKIVAFRKWMLD 290