Pairwise Alignments

Query, 300 a.a., LysR family transcriptional regulator from Agrobacterium fabrum C58

Subject, 303 a.a., DNA-binding transcriptional activator GcvA (RefSeq) from Shewanella sp. ANA-3

 Score =  164 bits (416), Expect = 2e-45
 Identities = 103/290 (35%), Positives = 158/290 (54%), Gaps = 3/290 (1%)

Query: 6   RLVPDIITLQAFECAARHGNFTRAAEELNLTQSAVSRQIGELEAQTGMQLFERIRRRVVL 65
           R +P +  ++AFE AARH +FTRAAEEL +TQ+AVS QI  LE   G++LF R  R ++L
Sbjct: 3   RRLPPLNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRKNRSLLL 62

Query: 66  SEAGRKFLPDVRRLLQQSEQLMVRAVSAGTSHASLSVATLPTFGSRWLMPRLSRFIDANP 125
           +E G+ +  D++ +  Q      R + A ++  SL+V+  P+F  +WL+PRLS+F + NP
Sbjct: 63  TEEGQSYFLDIKDIFTQLADATDRLL-ARSAIGSLTVSMSPSFAIQWLVPRLSKFSEKNP 121

Query: 126 DMTITIGSRSHPFDFDEEGFDLAIHYGQPIWAHGTCTFLCNEVIVPVASPALLR-RAGVN 184
           D+ + I +         +  D+AI+YG   W       L NEV++PV SP LL     ++
Sbjct: 122 DIDVRIKAVDTEASSLTDDVDVAIYYGLGNWPGLRADKLRNEVLIPVCSPMLLNGPKPLS 181

Query: 185 RAQDLAGQPLLHVTTRPKLWTEWLEMNGVTADNAYQGSRFDQFSMIIEAAASGIGFALLP 244
           + +DL    LLH  +R   W  W    G+   N  QG  F   S++++AAA G G AL  
Sbjct: 182 KPEDLKYHTLLHDMSRHD-WQAWFRQCGIHDINVNQGPIFSHSSLVLQAAAHGQGVALGY 240

Query: 245 RYLIEAELASSRLEIVFDIPLQTDKSYYVALPEGRQDNVLARAFQAWLLD 294
             L   ++ + RL   F   L +  +YY+   +   +     AF+ W+LD
Sbjct: 241 SVLARPDIKAGRLVCPFQEVLVSKDAYYLVCQQNHAELGKVVAFREWMLD 290