Pairwise Alignments

Query, 162 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 1037 a.a., diguanylate cyclase (GGDEF domain) with PAS/PAC sensor from Synechococcus elongatus PCC 7942

 Score = 41.6 bits (96), Expect = 4e-08
 Identities = 25/117 (21%), Positives = 55/117 (47%), Gaps = 3/117 (2%)

Query: 43  ISLEETLVGYYTWNVGQNLVYLDAVTARLREFSPEEAAHGIPVEDFIAQIESGSRARVAK 102
           ++ + +L   + W++  + +Y  + +  +  +  +E      +  F + +    R  V  
Sbjct: 352 LAFQGSLAAIWDWDLVTSDLYFSSRSLEILGY--QEGDIPPKISSFFSLLHPDDRIFVQS 409

Query: 103 AVYNSLTNGVF-YDQEYRIRLKSSGFRWLRTTGRVILDGDRIPIMAMGTVRDVSAGK 158
           A+    ++  + YD EYRI+ KS  +RW ++TG  + D    P   +G+  D++  K
Sbjct: 410 ALDAHFSSAKYPYDVEYRIQQKSGEYRWFQSTGIAVRDEQNKPYRMVGSTIDITRRK 466



 Score = 23.9 bits (50), Expect = 0.009
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 9/75 (12%)

Query: 60  NLVYLDAVTARLREFSPEEAAHGIPVEDFIAQIESGSRARVAKAVYNSLTNGVFYDQEYR 119
           N V+L+     L +     +  G+   D  + +   S  R A + +NS      Y  EYR
Sbjct: 503 NSVWLNFTGRSLEQELDSGSIEGVLSADLQSYL---SNYRTAFSQHNS------YKAEYR 553

Query: 120 IRLKSSGFRWLRTTG 134
           +R     +RW+   G
Sbjct: 554 LRRHDGEYRWILEEG 568