Pairwise Alignments

Query, 385 a.a., cytochrome d oxidase subunit II from Agrobacterium fabrum C58

Subject, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

 Score =  335 bits (859), Expect = 1e-96
 Identities = 163/380 (42%), Positives = 246/380 (64%), Gaps = 2/380 (0%)

Query: 6   LIDYEILRVIWWLLLGVLLIGFAVTGGFDLGTGALLPFVAKTDIERRVVINSIGPVWEGN 65
           + +Y+ LR+IWW L+G LLIGF +T GFD+G GALLP + +++ ++RV+INSI P W+GN
Sbjct: 1   MFEYDTLRLIWWGLIGALLIGFMITDGFDMGVGALLPILGQSESDKRVMINSIAPHWDGN 60

Query: 66  QVWLILGGGAIFAAWPPLYAVSFSGFYLAMFATLFALILRPVGFKYRSKRESPAWRSGWD 125
           QVWLI  GGA+FAAWP +YA SFS  Y+AM+  L AL LRP+  +YR+K ++P+WR   D
Sbjct: 61  QVWLITAGGALFAAWPLVYATSFSSLYIAMYLILLALWLRPLALEYRAKIDTPSWRKICD 120

Query: 126 WALFVGGFVPALIFGVAIGNVLQGVPFHFNDDLRIFYDGTTLFELLNPYALLCGLVSVSM 185
            ++ + G +P L+FGVA GN++QG+PF  N  L + Y G +  +L+ P+++L G + V M
Sbjct: 121 ISISLSGLIPPLLFGVAFGNLMQGLPFSLNALLMVDYHG-SFIDLITPFSVLSGGIGVLM 179

Query: 186 LVMHGAAWLVLKTEGPVAARARSFGSIAALATTVLFALGGVFLWLGVDGYRFTSEVVTDG 245
            ++ G+AWL LKT   +  +AR    I+ L    LF +GG F+  G++GY   S +  + 
Sbjct: 180 ALVQGSAWLTLKTSDILHKKARLTAQISVLCLFGLFIIGG-FMVHGMNGYLIVSSLDYNA 238

Query: 246 PSNPLSKTVEVAGGVWFANYAAHPWMMLAPALGLVFPLFAFILFRARREVLALLSSSLAI 305
            SNPL+K V    G W  N+  +PWM  AP  GL+  +  F+  + + + +  + +S+  
Sbjct: 239 ISNPLNKVVFQQAGAWLTNFERYPWMWFAPMGGLMMAMGVFLSAKWKNDAITFVCASVTN 298

Query: 306 FGIIATVGLTMFPFILPSSVDPRSSLTVWDASSSHMTLFNMLVVTLIFVPMIVAYTSWVY 365
             II T G  MFPFI+PSS +P  SLT+WDA+SS  TL  M  V  + +P+I+ YT++ Y
Sbjct: 299 ACIILTAGFAMFPFIMPSSFEPSHSLTLWDATSSERTLNIMTGVAFVMLPIILFYTAFSY 358

Query: 366 RVLWGKVDEKAIRDDSGHAY 385
           R ++G++D++ I  +    Y
Sbjct: 359 RTMFGRLDKQYIERNHHSLY 378