Pairwise Alignments

Query, 385 a.a., cytochrome d oxidase subunit II from Agrobacterium fabrum C58

Subject, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

 Score =  401 bits (1031), Expect = e-116
 Identities = 200/380 (52%), Positives = 258/380 (67%), Gaps = 2/380 (0%)

Query: 6   LIDYEILRVIWWLLLGVLLIGFAVTGGFDLGTGALLPFVAKTDIERRVVINSIGPVWEGN 65
           + DYEILR+IWW+L+GVLL+GFA+T GFD+G GAL+P + K D ERRV+INSI P W+GN
Sbjct: 1   MFDYEILRLIWWVLIGVLLVGFAITDGFDMGVGALVPIIGKNDNERRVMINSIAPHWDGN 60

Query: 66  QVWLILGGGAIFAAWPPLYAVSFSGFYLAMFATLFALILRPVGFKYRSKRESPAWRSGWD 125
           QVWLI  GGA+FAAWP +YA SFSGFYLAM  TL AL LRPVG  YRSK ES  WR+ WD
Sbjct: 61  QVWLITAGGALFAAWPLVYATSFSGFYLAMIVTLAALWLRPVGLDYRSKIESTKWRNNWD 120

Query: 126 WALFVGGFVPALIFGVAIGNVLQGVPFHFNDDLRIFYDGTTLFELLNPYALLCGLVSVSM 185
            A+   GF+P +IFGVA GN+LQGVPF  +D L   Y G + F LLNP+ALLCGLVS+ M
Sbjct: 121 LAISASGFIPPVIFGVAFGNLLQGVPFQLSDFLMPTYHG-SFFGLLNPFALLCGLVSLFM 179

Query: 186 LVMHGAAWLVLKTEGPVAARARSFGSIAALATTVLFALGGVFLWLGVDGYRFTSEVVTDG 245
            ++ G+AWL +KT   V  RAR+   +  L T V F   G F    +DGY     +  + 
Sbjct: 180 TLLQGSAWLQMKTTSHVHQRARNVAQLTGLLTAVCFVAAG-FWVQHIDGYMIVGAIDGNA 238

Query: 246 PSNPLSKTVEVAGGVWFANYAAHPWMMLAPALGLVFPLFAFILFRARREVLALLSSSLAI 305
            SNPL+K V    G W  N+   P + LAPALG++ PL + +  R  +  LA L+SSL  
Sbjct: 239 ASNPLNKEVIREAGAWLHNFEQVPVLWLAPALGVLMPLLSVLASRLDKGGLAFLTSSLGN 298

Query: 306 FGIIATVGLTMFPFILPSSVDPRSSLTVWDASSSHMTLFNMLVVTLIFVPMIVAYTSWVY 365
            G+I T G  MFPF++PSS++P  SLT+WDA+SS +TL  M VV ++ VP+I+ YT W Y
Sbjct: 299 AGVIFTAGFAMFPFVMPSSLNPAHSLTMWDATSSKLTLELMTVVAVVMVPIILGYTIWSY 358

Query: 366 RVLWGKVDEKAIRDDSGHAY 385
             ++G++D+K I D+    Y
Sbjct: 359 YKMFGRLDDKFIEDNKNSLY 378