Pairwise Alignments

Query, 385 a.a., cytochrome d oxidase subunit II from Agrobacterium fabrum C58

Subject, 330 a.a., cytochrome BD ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

 Score =  125 bits (313), Expect = 2e-33
 Identities = 111/381 (29%), Positives = 168/381 (44%), Gaps = 73/381 (19%)

Query: 10  EILRVIWWLLLGVLLIGFAVTGGFDLGTGALLPFVAKTDIERRV-VINSIGPVWEGNQVW 68
           + L  I+ LLLG  +  +AV  G+DLG G LLP   + D+ +R  +I SIGP W+ N+ W
Sbjct: 3   QYLPEIYLLLLGFTVFMYAVLDGYDLGVGILLP---RNDVAQRDRMIASIGPFWDANETW 59

Query: 69  LILGGGAIFAAWPPLYAVSFSGFYLAMFATLFALILRPVGFKYRSKRESPAWRSGWDWAL 128
           L+L  G +  A+P  +++ F+  YL     L ALI+R V F +R+K ++   +  WD   
Sbjct: 60  LVLAVGILLIAFPTAHSLIFTELYLPTALMLIALIMRGVAFDFRAKAKADH-KDHWDLCF 118

Query: 129 FVGGFVPALIFGVAIGNVLQGVPFHFNDDLRIFYDGTTLFELLNPYALLCGLVSVSMLVM 188
            +G  + AL  G  IG  + G           F      +     +A+L  L   +  V 
Sbjct: 119 KIGSLLAALTQGYMIGRYVVG-----------FESAPEAYA----FAVLSALCVAAAYVY 163

Query: 189 HGAAWLVLKTEGPVAARARSFGSIAALATTVLFALGGVFLWLGVDGYRFTSEVVTDGPSN 248
            G AWLVLKTEG +  RA  +   A               WL   G    S V      N
Sbjct: 164 IGGAWLVLKTEGELQVRAARWSRKAG--------------WLAALGVLSVSLV------N 203

Query: 249 PLSKTVEVAGGVWFANYAAHPW------MMLAPALGLVFPLFAFILFRARREVLALLSSS 302
           P           W  +  A  W      ++LAP   +VF     ++ R  + V  +  + 
Sbjct: 204 P-----------WVNSAVAERWFSFPEVILLAPVPIIVFATI-LVVDRYLKRVPTVNDAG 251

Query: 303 LA--IFGIIATVGLTM-------FPFILPSSVDPRSSLTVWDASSSHMTLFNMLVVTLIF 353
           +    FG++   GL+        FP I+P        +T   A+SS  TL  + +  +I 
Sbjct: 252 VQWPFFGVVLIFGLSFLGLAYSFFPEIVPGI------MTAQQAASSPETLMVVGIGVVIV 305

Query: 354 VPMIVAYTSWVYRVLWGKVDE 374
           +P I+ YT +VYR+  GK  +
Sbjct: 306 MPTILLYTFFVYRIFKGKATD 326