Pairwise Alignments

Query, 385 a.a., cytochrome d oxidase subunit II from Agrobacterium fabrum C58

Subject, 334 a.a., cytochrome d ubiquinol oxidase subunit 2 from Phaeobacter inhibens DSM 17395

 Score =  162 bits (411), Expect = 1e-44
 Identities = 110/363 (30%), Positives = 177/363 (48%), Gaps = 40/363 (11%)

Query: 12  LRVIWWLLLGVLLIGFAVTGGFDLGTGALLPFVAKTDIERRVVINSIGPVWEGNQVWLIL 71
           L  IW  ++   ++ + V  GFDLG G L PF A ++ +R  ++NSI PVW+GN+ WL+L
Sbjct: 5   LSFIWAGIIAFAVLTYVVLDGFDLGVGILFPF-ATSERDRATMMNSIAPVWDGNETWLVL 63

Query: 72  GGGAIFAAWPPLYAVSFSGFYLAMFATLFALILRPVGFKYRSKRESPAWRSGWDWALFVG 131
           GGG +FA +P  YAV     Y+ +   L AL+ R V F+YR +  +  WR  WD A F G
Sbjct: 64  GGGGLFAVFPLAYAVIMPALYMPITLMLLALVFRGVAFEYRWR--TTRWRGVWDSAFFGG 121

Query: 132 GFVPALIFGVAIGNVLQGVPFHFNDDLRIFYDGTTLFELLNPYALLCGLVSVSMLVMHGA 191
             V A + G+A+G ++QGV      + R +  G   ++ L P+++L GL  ++   + GA
Sbjct: 122 SVVAATMQGIALGALVQGVEV----EGRAYAGG--WWDWLTPFSVLTGLAVLTGYALLGA 175

Query: 192 AWLVLKTEGPVAARARSFGSIAALATTVLFALGGVFLWLGVDGYRFTSEVVTDGPSNPLS 251
            WL +KTEG +  + R +       T    AL  +        Y                
Sbjct: 176 TWLNMKTEGELQRQMRGYARWLGAGTLAAIALVSLLTPFQDPEYFRR------------- 222

Query: 252 KTVEVAGGVWFANYAAHPWMMLAPALGLVFPLFAFILFRARREVLALLSS-SLAIFGIIA 310
                    WF N     + +L P L  +     F   +  R+    L++  L +   I 
Sbjct: 223 ---------WF-NLPGSLFSLLVPGLVALCSYALFQGLKGSRDAQPFLAALGLFVLSFIG 272

Query: 311 TVGLTMFPFILPSSVDPRSSLTVWDASSSHMTLFNMLVVTLIFVPMIVAYTSWVYRVLWG 370
            +G++ +PFI+P        LT+ +A++   +L   LV  ++ VP+I+ YT++ Y V  G
Sbjct: 273 -IGISFYPFIVP------PGLTIAEAAAPDESLMFTLVGAVVLVPLILGYTAYAYWVFRG 325

Query: 371 KVD 373
           K++
Sbjct: 326 KIN 328