Pairwise Alignments

Query, 385 a.a., cytochrome d oxidase subunit II from Agrobacterium fabrum C58

Subject, 335 a.a., cytochrome d ubiquinol oxidase, subunit II (RefSeq) from Shewanella sp. ANA-3

 Score =  151 bits (381), Expect = 3e-41
 Identities = 111/370 (30%), Positives = 180/370 (48%), Gaps = 47/370 (12%)

Query: 12  LRVIWWLLLGVLLIGFAVTGGFDLGTGALLPFVAKTDIERRVVINSIGPVWEGNQVWLIL 71
           L +IW+ ++    + + V  GFDLG G L PF+   D +R V++N++ PVW+GN+ WL+L
Sbjct: 5   LPLIWFGIIIFATLMYIVMDGFDLGIGILFPFIHDED-DRDVMVNTVAPVWDGNETWLVL 63

Query: 72  GGGAIFAAWPPLYAVSFSGFYLAMFATLFALILRPVGFKYRSKRESPAWRSGWDWALFVG 131
           GG ++  A+P  YA+      + +   L ALI R V F++R K  S   +  WD A   G
Sbjct: 64  GGASLLGAFPLAYAIVLEALTIPLLIMLLALIFRGVAFEFRFK-SSAETKPFWDKAFMFG 122

Query: 132 GFVPALIFGVAIGNVLQGVPFHFNDDLRIFYDGTTLFELLNPYALLCGLVSVSMLVMHGA 191
             +     GV +G  + G+     D  R  + G++ F+ L+P++L CG   +    + GA
Sbjct: 123 SIIATFAQGVVLGAFISGISV---DGQR--FSGSS-FDWLSPFSLFCGFGLMLAYALLGA 176

Query: 192 AWLVLKTEGPVAARARSFGSIAALATTVLFALGGVFLWLGVDGYRFTSEVVTDGPSNPLS 251
            WLV K  G +    +    +  LA  +L  +G V LW        T  V    P+  L 
Sbjct: 177 TWLVKKCTGTLKTTMQQLAKV--LAVCLLMTIGIVSLW--------TPFV---QPNIALR 223

Query: 252 KTVEVAGGVWFA-----NYAAHPWMMLAPALGLVFPLFAFILFRARREVLALLSSSLAIF 306
                    WF+      +A  P ++L     L+  L     +R     LAL      IF
Sbjct: 224 ---------WFSLPNLFYFAPVPLLVLLCTKALIRALNTEDDYRPFLLTLAL------IF 268

Query: 307 GIIATVGLTMFPFILPSSVDPRSSLTVWDASSSHMTLFNMLVVTLIFVPMIVAYTSWVYR 366
              + +G++++P I+P ++      ++W A++   +L  ML+  L+ +P+I+AYT W Y 
Sbjct: 269 LGFSGLGISIWPHIIPPTI------SLWQAAAPESSLGFMLIGALMIIPLILAYTFWSYY 322

Query: 367 VLWGKVDEKA 376
           V  GKV + A
Sbjct: 323 VFRGKVTKDA 332