Pairwise Alignments

Query, 525 a.a., cytochrome d oxidase from Agrobacterium fabrum C58

Subject, 530 a.a., cytochrome d terminal oxidase subunit 1 from Vibrio cholerae E7946 ATCC 55056

 Score =  597 bits (1540), Expect = e-175
 Identities = 285/504 (56%), Positives = 378/504 (75%), Gaps = 4/504 (0%)

Query: 3   LDIVALSRLQFAVTALYHFLFVPLTIGLSVVIAIMETVYVMTGRTIWRQMTKFWGTLFGI 62
           +D+V LSRLQFA+TA++HFLFVPLTIG+S ++AIME++YV+TG+ I++ MT+FWG LFGI
Sbjct: 6   IDVVELSRLQFALTAMFHFLFVPLTIGMSCLLAIMESIYVLTGKQIYQDMTRFWGKLFGI 65

Query: 63  NFVLGVSTGIVMEFQFGMNWSYYSHYVGDIFGAPLAIEGMMAFFLEATFVGLFFFGWDKL 122
           NF LGV+TG+ MEFQFG NWSYYSHYVGDIFGAPLAIE ++AFFLE+TFVGLFFFGW +L
Sbjct: 66  NFALGVTTGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEALVAFFLESTFVGLFFFGWSRL 125

Query: 123 SKLGHLVATWCVAIGSNFSALWILIANGWMQNPTGSAFNPQTMRMEVTDFFAVLFNPVAQ 182
           SK  HL+ TW VA+GS+FSALWIL+ANGWMQNP G+ FN QTMRME+T F  V+ NPVAQ
Sbjct: 126 SKRQHLLITWLVALGSSFSALWILVANGWMQNPVGAEFNYQTMRMEMTSFAEVVLNPVAQ 185

Query: 183 AKFVHTVSAGYVTASIFVLGVSAWYVLKGRHVDLAKRSMTVAASFGLASALSVVVLGDES 242
            KF+HTV++ Y   ++F+LGVS++Y+L+GR ++ A+RS  +AA+FG+A+ +SV+VLGDES
Sbjct: 186 VKFLHTVASAYTCGAMFILGVSSYYLLQGRDIEFARRSFAIAATFGMAAIISVIVLGDES 245

Query: 243 GYLSTEHQKMKLASIEAMWETEPAPAPFTAIGFPDQEARETHFAVKIPWVMGLIGTRSLD 302
           GY   + QK+KLA+IEA W TEPAPA FT  G P+Q+  +T +A+KIP++MGLI TRS D
Sbjct: 246 GYKLGDVQKVKLAAIEAEWHTEPAPAAFTLFGLPNQKEGKTDYAIKIPYLMGLIATRSFD 305

Query: 303 TQIPGINDLVEQAKTRIRDGIKAYDALMQIRATGKGAQLPEEVRGTFAEVGHELGYALLL 362
            Q+ G++DL  +   RIR+G+ AY  L +++A         E +  F +  H+LGY LLL
Sbjct: 306 EQVTGLHDLRHEHLLRIRNGMVAYQLLERLQA----GDASVETQRKFEQTKHDLGYGLLL 361

Query: 363 KRYVDDPRQASEEQIAKAAADTIPHVPTLFWSFRIMVGLGMFFILLTATFFYLSARRRLD 422
           KRY D    A+E QI +AA D++P V  LFWSFRIMVG G   + +       + R+R+ 
Sbjct: 362 KRYTDTITDANEAQIQQAADDSMPTVWPLFWSFRIMVGCGFIMLFVFGAALLQTCRQRIT 421

Query: 423 HYPLLLKVAVFAVPLPWIAAEMGWVVAEFGRQPWIIEGVLPTAAAVSSLSASTVLITLLC 482
           H P +LK A++++PLPWIA E GW VAE+GRQPW I  VLP   AVSS +   ++ +L  
Sbjct: 422 HKPWVLKAALWSIPLPWIAIEAGWFVAEYGRQPWAIGEVLPVTVAVSSQTFENLITSLAI 481

Query: 483 FIAIYTVLFIVEMGLMLKAIRKGP 506
            +++YTV   VE  L++   RKGP
Sbjct: 482 ILSLYTVFIFVESYLIVTVARKGP 505