Pairwise Alignments

Query, 525 a.a., cytochrome d oxidase from Agrobacterium fabrum C58

Subject, 541 a.a., cytochrome d terminal oxidase subunit 1 from Vibrio cholerae E7946 ATCC 55056

 Score =  627 bits (1616), Expect = 0.0
 Identities = 303/504 (60%), Positives = 385/504 (76%), Gaps = 4/504 (0%)

Query: 3   LDIVALSRLQFAVTALYHFLFVPLTIGLSVVIAIMETVYVMTGRTIWRQMTKFWGTLFGI 62
           +D+V LSRLQFA+TA+YHFLFVPLT+G++ ++AIME++YVMT + I++ MTKFWG LFGI
Sbjct: 15  IDVVDLSRLQFALTAMYHFLFVPLTLGMAFLLAIMESLYVMTDKQIYKDMTKFWGKLFGI 74

Query: 63  NFVLGVSTGIVMEFQFGMNWSYYSHYVGDIFGAPLAIEGMMAFFLEATFVGLFFFGWDKL 122
           NF LGV+TG+ MEFQFG NWSYYSHYVGDIFGAPLAIE ++AFFLE+TFVGLFFFGWD+L
Sbjct: 75  NFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEALVAFFLESTFVGLFFFGWDRL 134

Query: 123 SKLGHLVATWCVAIGSNFSALWILIANGWMQNPTGSAFNPQTMRMEVTDFFAVLFNPVAQ 182
           SK  HLV TW VA+GSNFSALWIL+ANGWMQNP GS FN +TMRME+  F  V+ NPVAQ
Sbjct: 135 SKRQHLVVTWLVALGSNFSALWILVANGWMQNPVGSEFNFETMRMEMVSFADVVLNPVAQ 194

Query: 183 AKFVHTVSAGYVTASIFVLGVSAWYVLKGRHVDLAKRSMTVAASFGLASALSVVVLGDES 242
            KFVHTV+AGY T ++F+LG+SA+Y+LKGR V  A+RS  +AASFG+AS LSV+VLGDES
Sbjct: 195 VKFVHTVAAGYTTGAMFILGISAYYLLKGRDVAFARRSFAIAASFGMASVLSVIVLGDES 254

Query: 243 GYLSTEHQKMKLASIEAMWETEPAPAPFTAIGFPDQEARETHFAVKIPWVMGLIGTRSLD 302
           GY   E Q++KLA+IE+ W TEPAPA FT  G P+QE   T +A+KIP+ +G+I TRSLD
Sbjct: 255 GYELGEVQRVKLAAIESEWHTEPAPAAFTLFGIPNQEEMRTDYAIKIPFALGIIATRSLD 314

Query: 303 TQIPGINDLVEQAKTRIRDGIKAYDALMQIRATGKGAQLPEEVRGTFAEVGHELGYALLL 362
            Q+ G+ DL ++   RIR GI AYD L ++RA   G + PE +   F EV H+LGY LLL
Sbjct: 315 EQVVGLRDLRDEHVERIRTGIYAYDLLERLRA---GEKTPENM-AAFDEVKHDLGYGLLL 370

Query: 363 KRYVDDPRQASEEQIAKAAADTIPHVPTLFWSFRIMVGLGMFFILLTATFFYLSARRRLD 422
           KRY D    A+EEQI  AA D+IP V  LFWSFRIMV  G   +++    F  + R++++
Sbjct: 371 KRYTDKVTDATEEQIQAAADDSIPTVWPLFWSFRIMVACGFIMLVVFGAAFIQTCRQKIE 430

Query: 423 HYPLLLKVAVFAVPLPWIAAEMGWVVAEFGRQPWIIEGVLPTAAAVSSLSASTVLITLLC 482
               +LK A+F++PLPWIA E GW VAE+GRQPW +  +LP   A S+LSA  ++ ++L 
Sbjct: 431 QKKWVLKAALFSIPLPWIAVETGWFVAEYGRQPWAVGEILPVNVAASALSAGEIITSMLA 490

Query: 483 FIAIYTVLFIVEMGLMLKAIRKGP 506
            +A+YT+  I E+ LM+K  RKGP
Sbjct: 491 ILALYTIFLIAEVYLMVKFTRKGP 514