Pairwise Alignments

Query, 563 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

 Score =  124 bits (310), Expect = 1e-32
 Identities = 120/465 (25%), Positives = 202/465 (43%), Gaps = 26/465 (5%)

Query: 97  SVLAALREKLFRGFAAPQAAKSLEARPARLLNRLTADIDALDSLYLRVLVPAA---VAIL 153
           +V+  +R +LF  F         +     LL+R+T D + +     R LV       +I+
Sbjct: 95  NVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASII 154

Query: 154 AALVTGFGLAFLHPLAGVLAATFLIAAGLGISARSALKAEKFSRRRAIGLEALRARTADL 213
             L   F  ++   L  ++ A  +  A   +S R      K SR     +  + +    +
Sbjct: 155 GLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRF----RKISRNMQTAMGHVTSSAEQM 210

Query: 214 VSGQTELLTTGRLSAQVAAVKRADDYLAACDDSLNRIETNAGFSFGLSAAILLSAALLGM 273
           + G   +L+ G    +     +  + +      L   ++ A     + A++ L A L  +
Sbjct: 211 LKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLF-L 269

Query: 274 ACLVEHGAGSAPAA-ALGLLVCFAALEPFTALRRGAMELGRTLFSARRIAPRLSATAEAH 332
           A +    A   P    +     F  + P  AL     E  R + + + +   +    E  
Sbjct: 270 ASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERD 329

Query: 333 CPALPASGIAAEL--RGVRLEREGNEHPVLTNINLAIACGERVAIVGASGAGKTSLIQLV 390
                A  +  E+  + V    +G E P L++++ +I  G+ VA+VG SG+GK+++  L 
Sbjct: 330 NGKYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLF 389

Query: 391 AGELHPAAGS-------VRALPST-------LMTQRSQLFRDSIADNLRLAKPAA-TGVE 435
                  +GS       VR    T       L++Q   LF D+IA+N+  A     T  +
Sbjct: 390 TRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQ 449

Query: 436 LWEALEAAGLAEHVRTLPKRLETKLGEAGQGLSGGQSRRLALARFLLADRPLWLLDEVTE 495
           + +A   A   E +  +P+ L+T +GE G  LSGGQ +R+A+AR LL D P+ +LDE T 
Sbjct: 450 IEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATS 509

Query: 496 GLDGETARDVLGRLFARVEGKTVLMITHNRREAEFADRIIVLREG 540
            LD E+ R +   L    + KTVL+I H     E AD I+V+ EG
Sbjct: 510 ALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEG 554