Pairwise Alignments

Query, 563 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 721 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

 Score =  118 bits (296), Expect = 7e-31
 Identities = 92/285 (32%), Positives = 131/285 (45%), Gaps = 25/285 (8%)

Query: 290 GLLVCFAAL-----EPFTALRRGAMELGRTLFSARRIAPRLSATAEAHCPAL---PASGI 341
           G LV F  L     +P   L +   +   TL + RR+   L    E     L   P    
Sbjct: 421 GQLVAFNMLAGHVTQPVLRLAQIWQDFQHTLIALRRVGDILDEPRENSKQGLASVPELDG 480

Query: 342 AAELRGVRLEREGNEHPVLTNINLAIACGERVAIVGASGAGKTSLIQLVAGELHPAAGSV 401
             E   +R     +   VL N++L I  G+ + + G SG+GK++L +L+     P  G V
Sbjct: 481 GIEFSNIRFRYHQDAPEVLANLSLKIKPGQFIGVTGPSGSGKSTLTRLLQRLYVPQHGQV 540

Query: 402 R--------ALPSTL------MTQRSQLFRDSIADNLRLAKPAATGVELWEALEAAGLAE 447
                    A P +L      + Q S LF  S+ADN+RL KP A+  E+  A + AG   
Sbjct: 541 LVDGMDLAIADPVSLRRNMSVVLQESILFSGSVADNIRLCKPQASDEEIRHAAQLAGALA 600

Query: 448 HVRTLPKRLETKLGEAGQGLSGGQSRRLALARFLLADRPLWLLDEVTEGLDGETARDVLG 507
            +  LP      +GE G  LSGGQ +R+ALAR LL +  + LLDE T  LD  +   ++ 
Sbjct: 601 FIEGLPHGFNQPVGEKGAALSGGQRQRIALARALLVNPRILLLDEATSALDYNSEASIMS 660

Query: 508 RLFARVEGKTVLMITHNRREAEFADRIIVLREGRQFDECQSGTLE 552
            +     G+TV+ I H       AD I VL +G+     +SGT E
Sbjct: 661 NMDEICRGRTVISIAHRLNTIRHADNIFVLDKGQ---VAESGTHE 702