Pairwise Alignments

Query, 508 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 704 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

 Score =  130 bits (327), Expect = 2e-34
 Identities = 127/476 (26%), Positives = 212/476 (44%), Gaps = 35/476 (7%)

Query: 45  LQAVAKVSPLDLSRTASGEAAGIVAEAAE----ALVPYLSRFQPAR---MKATIVPLV-- 95
           +    K S + +S     +  GI  EA      A   +L  F+  R     ATI  L+  
Sbjct: 216 IDVAGKKSDILISSKLFSKVMGIRMEARPPSVGAFARHLQEFESIREFFTSATISSLIDL 275

Query: 96  -FVLAILPFSWIAA----LVLLLAMPTIPLFMALIGWQAKAASEKQLAETGNINAFLLDR 150
            F L  L   W+ A     V ++ +  + ++  LI  + K A E+         A L++ 
Sbjct: 276 PFALLFLVLIWLMAGHLVWVPVIGVLILVIYSFLIQSRLKRAIEEGSRLASQKYANLIES 335

Query: 151 LRGLETIRTLKAVDLTAARLDADAQNLKKRTMAVLRIAFL---SSAVLELFAAIGVAMTA 207
           L GLET++   A      R +    ++    +   RI      ++  ++  A IG+ +  
Sbjct: 336 LAGLETVKLFGAQGQFQYRWEEAVAHMANWNIKSRRITDSIQNTAGFVQQAANIGMIIVG 395

Query: 208 VYIGFHLLGFLDFGAWGEKLTLAEGLFILLLAPAFFEPLRELSAVWHDRAAGEASLNALA 267
           VY+                LT+   +   +L+     PL +LS +       ++S+  + 
Sbjct: 396 VYL-----------ISNGDLTMGGLIAATMLSGRAIGPLVQLSLLSTRYNQAKSSMTIIE 444

Query: 268 TLTAGGAAIVGEGADVVRAPSSTPGLLEMENLSFAYPNAPPV-IRNFNLTVQQGERVAIL 326
            + +       EG   +  P    G +E++ ++F YPN+P   +R+ +LT+  GE+VAI+
Sbjct: 445 QVMSMPDE-QEEGKRYIHRPI-IQGKIELDRVTFHYPNSPIASVRDLSLTIHPGEKVAII 502

Query: 327 GASGCGKSTILSLIAGLAEAGEGVIRIGGVTLDDATADGLRGTIGWVSQKPFFFAASMKA 386
           G  G GK+T+  LI GL +  EG +RI    +       +R  IG V Q    F  S++ 
Sbjct: 503 GRIGSGKTTLERLIMGLYKPTEGHVRIDDTDISQLHHIDIRRNIGCVPQDSVLFYGSIRD 562

Query: 387 NIGFGRLAVSEAMVEEVLHRTGLDGLTQ---ARRHLQIGDGGNGISGGEAVRLAIARAFA 443
           NI  GR    +  V +  +R G+   TQ   A    Q+G+GG  +SGG+   ++IARAF 
Sbjct: 563 NITLGRPLSDDREVMDAANRAGVTVFTQQDPAGLERQVGEGGMLLSGGQRQSVSIARAFL 622

Query: 444 DPATQLVLADEPTAHLDRETAALVTDNLLQLAKGRTLIVATHDPVLAARMDRIVDM 499
                ++L DEPT+ +D  +   +   L QL    TLI+ TH   +   +DR++ M
Sbjct: 623 G-RPPVLLMDEPTSAMDNRSEMHIKQQLSQLKPSETLILITHKTSMLDVVDRVIVM 677