Pairwise Alignments

Query, 508 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 720 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

 Score =  140 bits (354), Expect = 1e-37
 Identities = 130/502 (25%), Positives = 230/502 (45%), Gaps = 36/502 (7%)

Query: 11  VLILGLLKAWLEKVAARLSFRAARAALSQRRFE---ALQAVAKVSPLDLSRTASGEAAGI 67
           VL+ GL+   + +V  R   R  + A +  R +    L+ V  +  L L    S +   I
Sbjct: 200 VLVFGLVITGVIEVVLR-GLREYQYAHTANRIDIQLGLKLVQHLFGLPLMFFKSRQVGAI 258

Query: 68  VAEAAEALVPYLSRFQPARMKATIVPLVFVLAIL-PFSWIAALVLLLAMPTIPLFMALIG 126
           V    E  +  +  F    M    V L+F+   L   S ++A +  L + T+P ++ L  
Sbjct: 259 VTRVRE--LDTIREFLTGSMFTLTVELLFMFVFLYVMSLLSAPLTGLFIATVPCYVLLAW 316

Query: 127 W---QAKAASEKQLAETGNINAFLLDRLRGLETIRTLKAVDLTAARLDADAQNLKKRTMA 183
           W   + +AA EKQ +      +FL + + G ET+++L        R D   + +      
Sbjct: 317 WLTPRMQAAIEKQFSHAAANTSFLTETVAGSETLKSLAVEPRFIRRWDEQTEKMVTTGYD 376

Query: 184 VLRIAFLSSAVLELFAAIGVAMTAVYIGFHLLGFLDFGAWGEKLTLAEGLFILLLAPAFF 243
           V ++   S+ +++L   I  ++  +++G   +  L+       +T+ + +   ++     
Sbjct: 377 VQQLNNRSNHLVQLLQKI-TSVAILWLGATEVLSLE-------MTIGQLIAFNMMTNHIA 428

Query: 244 EPLRELSAVWHDRAAGEASLNALATLTAGGAAIVGEGADVVRAPSSTPGLLEMENLSFAY 303
           +PL  +  +W        ++  L  +          G+D V    +  G +  +N+ F Y
Sbjct: 429 QPLARMVELWGQFIQTRVAIEKLGDML-NLPVEQHTGSDNV----TISGAISFKNILFRY 483

Query: 304 -PNAPPVIRNFNLTVQQGERVAILGASGCGKSTILSLIAGLAEAGEGVIRIGGVTLDDAT 362
            P+ PP I + +L ++ GE + ++G SG GKST+  L+  L    +G I I G+ L+   
Sbjct: 484 QPDIPPTINDLSLDIRAGETLGVVGTSGSGKSTLARLLLRLYSPEQGSITIDGIPLNHIN 543

Query: 363 ADGLRGTIGWVSQKPFFFAASMKANIGFGRLAVSEAMVEEVLHRTGLDGLTQARRHLQIG 422
              LR  +G V Q+ F F  S+  NI   +    EA +EE++    L G       L +G
Sbjct: 544 VQQLRQRVGVVLQENFLFHKSVSENIAQSK---PEASLEEIIEAAKLSGAHDFILKLPMG 600

Query: 423 ------DGGNGISGGEAVRLAIARA-FADPATQLVLADEPTAHLDRETAALVTDNLLQLA 475
                 +GG  +SGG+  RLAIAR   +DP  ++++ DE T+ LD E+ A++  N+  +A
Sbjct: 601 YDTVLAEGGQSLSGGQRQRLAIARTLLSDP--KVLILDEATSALDDESQAVIQANMASIA 658

Query: 476 KGRTLIVATHDPVLAARMDRIV 497
           +GRT+I   H        DRI+
Sbjct: 659 RGRTVITIAHRLSTVRDCDRII 680