Pairwise Alignments

Query, 508 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 595 a.a., thiol reductant ABC exporter subunit CydD from Vibrio cholerae E7946 ATCC 55056

 Score =  228 bits (582), Expect = 4e-64
 Identities = 149/484 (30%), Positives = 237/484 (48%), Gaps = 22/484 (4%)

Query: 10  AVLILGLLKAWLEKVAARLSFRAARAALSQRRFEALQAVAKVSPLDLSRTASGEAAGIVA 69
           A++ +  L +W  ++A    FR         R   L  +  + P  +    +G  A ++ 
Sbjct: 71  ALIAVRALCSWGREIAG---FRCGEEIRRYIRQLILDKLRDLGPAYIKGKPAGSWAALML 127

Query: 70  EAAEALVPYLSRFQPARMKATIVPLVFVLAILPFSWIAALVLLLAMPTIPLFMALIGWQA 129
           E  E +  + +R+ P    + +VP V +  + P +W A L+ LL  P +PLFMAL+G +A
Sbjct: 128 EQVENMHDFFARYLPQMSLSVLVPFVILAVVFPVNWAAGLIFLLTAPLVPLFMALVGIKA 187

Query: 130 KAASEKQLAETGNINAFLLDRLRGLETIRTLKAVDLTAARLDADAQNLKKRTMAVLRIAF 189
             AS K       ++    DRL+ L TIR           +   ++  + RTM VLRIAF
Sbjct: 188 ADASRKNFKALQRLSGHFYDRLQALTTIRLFDRTTAETEHMRGASEVFRHRTMDVLRIAF 247

Query: 190 LSSAVLELFAAIGVAMTAVYIGFHLLGFLDFGAWGEKLTLAEGLFILLLAPAFFEPLREL 249
           LSSAVLE F +I +A+TAVY GF  +G L+FG +G  +TL  GLF+L+LAP F++PLR+L
Sbjct: 248 LSSAVLEFFTSISIALTAVYFGFSYIGELNFGYYGASVTLFAGLFVLILAPEFYQPLRDL 307

Query: 250 SAVWHDR----AAGEASLNALAT---LTAGGAAIVGEGADVVRAPSSTPGLLEMENLSFA 302
              +H +     A E+ ++ L T       G   + +  D+          +   +L   
Sbjct: 308 GTYYHAKQLAVGAAESIVDFLQTEVDTLHSGERHLSDNDDIE---------IIANDLVVL 358

Query: 303 YPNAPPVIRNFNLTVQQGERVAILGASGCGKSTILSLIAGLAEAGEGVIRIGGVTLDDAT 362
            P    +    + T+Q G+  A++G SG GK+++++ I G     +G + I G+ L +  
Sbjct: 359 SPQGKRLAGPLSFTLQSGKTTALVGPSGAGKTSLINTILGFMPY-QGSLTINGIELRELD 417

Query: 363 ADGLRGTIGWVSQKPFFFAASMKANIGFGRLAVSEAMVEEVLHRT-GLDGLTQARRHLQI 421
               R TI WV Q P     +++ N+  G+  +++  V + L      + + Q      I
Sbjct: 418 HAQWRQTISWVGQNPLLLYGTIRDNVTLGKHNIADEQVTQTLQAAYAQEFVEQQGLDYPI 477

Query: 422 GDGGNGISGGEAVRLAIARAFADPATQLVLADEPTAHLDRETAALVTDNLLQLAKGRTLI 481
            D   G+S G+A RLA+ARA      +  L DEPTA LD  +   V   L +  + RT +
Sbjct: 478 SDRSAGLSVGQAQRLALARAILQNG-RFWLLDEPTASLDARSEQYVMRGLTESIQQRTAL 536

Query: 482 VATH 485
             TH
Sbjct: 537 FVTH 540