Pairwise Alignments

Query, 222 a.a., ribosomal large subunit pseudouridine synthase A from Agrobacterium fabrum C58

Subject, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

 Score =  101 bits (251), Expect = 2e-26
 Identities = 73/222 (32%), Positives = 111/222 (50%), Gaps = 21/222 (9%)

Query: 18  LTIVHRDDDLLVLDKPSGLLSVPGR---DPALSDSLMTRVQK--QFPKALMINRLDKDTS 72
           L IV+ DDD++V++KP   +  PG    D  + ++L+       + P+A +++RLDKDT+
Sbjct: 84  LNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFHYSPIAEVPRAGIVHRLDKDTT 143

Query: 73  GIVLMSLNRKAHAAIAAQFEKRETRKSYVAIVWGTVAGEEGEVDLPLAIDPDNKPRHRVD 132
           G+++++    A   +    +KR+  + Y AIV GT+    G +D P+      +    V 
Sbjct: 144 GLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMTAG-GMIDKPIGRHSTKRTLMSVS 202

Query: 133 HENGKPAQSLWRVLERLPLPATRLALTPLTGRTHQLRVHMKALGHPILGDEFYAE----- 187
              GK A + +RV E      TRL L   TGRTHQ+RVHM  L HP+LGD  Y       
Sbjct: 203 -PMGKHAVTHYRVAEHFR-EHTRLRLRLETGRTHQIRVHMAYLQHPLLGDTAYGGRARIP 260

Query: 188 -------GEALTAAPRLMLHAQEVGFRHP-DGRDVTYTVPCP 221
                   E +    R  LHA  + F HP  G ++ +  P P
Sbjct: 261 KGATEELTEMIRDFDRQALHAVMLKFEHPVTGEELEFHAPVP 302