Pairwise Alignments

Query, 208 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 261 a.a., ribosomal RNA small subunit methyltransferase J from Vibrio cholerae E7946 ATCC 55056

 Score =  165 bits (418), Expect = 6e-46
 Identities = 100/200 (50%), Positives = 129/200 (64%), Gaps = 11/200 (5%)

Query: 10  VDFVGGAVGHRFRSGEGRGQALPKAAGFTKGRTPKIVDATAGLGRDAFLLASLGAEVTLI 69
           VD+V GAV HR + G G+GQ++ KAAG  KG TP ++DATAGLGRDAF+LASLG  V ++
Sbjct: 57  VDWVEGAVAHRRKFGGGKGQSIAKAAGLNKGVTPVVLDATAGLGRDAFVLASLGCRVQMV 116

Query: 70  ERSPGMHAHLADGISRALEAGGAYAEAASRMTLLQGDSRQLLKEL-------SPEVVVID 122
           ER P + A L DG+ RA +     A  + R++LL   S   L++L       SP+VV +D
Sbjct: 117 ERHPVVAALLEDGLQRAKQDDEIGAWVSERISLLHASSHDALQQLASDPNFTSPDVVYLD 176

Query: 123 PMHPPRHN---TALVKKEMRVLRELVGSDPDQVELMEVALAHATKRVVLKWPLRADPMPG 179
           PM+P   N   TALVKKEMRV + LVG+D D   L+E AL  A KRVV+K P  A P  G
Sbjct: 177 PMYPHPENKKKTALVKKEMRVFQSLVGADNDADALLEPALQLAQKRVVVKRPDYA-PWLG 235

Query: 180 IRKPSHQIIGKNTRYDVFMI 199
            RKPS  +  K  R+DV++I
Sbjct: 236 NRKPSMAMETKKNRFDVYVI 255