Pairwise Alignments

Query, 338 a.a., sugar ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 313 a.a., L-arabinose ABC transporter, substrate-binding component AraU (from data) from Shewanella sp. ANA-3

 Score = 54.7 bits (130), Expect = 3e-12
 Identities = 70/276 (25%), Positives = 111/276 (40%), Gaps = 17/276 (6%)

Query: 28  AKKIALSNNYAGNSWRQAMLTSWDKITKQAVADKQVAAADAFTTAENQATEQAAQIQNLI 87
           A  +  S   + + WR    TS+ +  K     KQ      F  A+ +   Q   +++ I
Sbjct: 22  ATTVGFSQVGSESGWR----TSFSEAVKAEA--KQRGIDLKFADAQQKQENQIKAVRSFI 75

Query: 88  LQGYDAIVINAASPTALNGAVKEACDAGITVVSFDGIVTEP----CAWRIAVDFKAMGES 143
            QG DAI+I     T     +KEA  A I VV  D  +          RIA DF   G  
Sbjct: 76  AQGVDAIIIAPVVETGWKPVLKEAKRAKIPVVIVDRNIKVDDDSLFLTRIASDFSEEGRK 135

Query: 144 QIDYLAKAMPKGGNLLEIRGLAGVSVDDEIHAGIAAGVAKNPQFKIVGSVNGDWAQDVAQ 203
              +L        ++ E++G  G +   +  AG    +A  P  KIV S  G++ +   +
Sbjct: 136 IGQWLMDKTQGNCDIAELQGTVGATAAIDRAAGFNQVIANYPNAKIVRSQTGEFTRAKGK 195

Query: 204 RAVAGILPSL--PEVAAVVTQGGD-GYGAAQAF-AAAKRPTPTIVMGNREDELQWWKQQK 259
             + G L +     + AV +   +   GA QA   A  +P   I++ + +    ++K   
Sbjct: 196 EVMEGFLKAQNGQPLCAVWSHNDEMALGAVQAIKEAGLKPGKDILIVSVDGVPDYFKAMA 255

Query: 260 DASGYETMSVSIAPGVSTLAFWVAQQILDG-KDVKK 294
           D  G    +V ++P +   AF      L G KD  K
Sbjct: 256 D--GDVNATVELSPYLGGPAFDAIDAYLKGNKDQAK 289