Pairwise Alignments

Query, 315 a.a., sugar ABC transporter permease from Agrobacterium fabrum C58

Subject, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  108 bits (269), Expect = 2e-28
 Identities = 74/269 (27%), Positives = 133/269 (49%), Gaps = 8/269 (2%)

Query: 49  SVIVGIGQMFVITLGPGNIDLCVPATMTLSGTLALKFMDVSDSLILPGLLIAILIGIAIG 108
           + I+ +G   VI      IDL V + + L G  A   + + +  +L  +  A+L G A+G
Sbjct: 68  NAIIAVGMTLVILTA--GIDLSVGSVLALCGAFAATLVAM-EVPVLVAVPTALLAGAALG 124

Query: 109 IGNYALIKLLRIPPIIATLSMSFIVQSIAIWSNRGLRIKP-----PETLATFAISSSFGI 163
             +  +I   ++   IATL    +++ + +    G  I        +T A F    + GI
Sbjct: 125 AISGIIIAKGKVQAFIATLVTMTLLRGVTMVYTDGRPISTGFTDTADTFAWFGTGYTLGI 184

Query: 164 PNVALVALLLSVIAWLLLDRTFYGRWIAAIGQSTFAARMTGIPVDGTRFVTYVLCAVLAA 223
           P    + +++   AW LL+ T +GR++ A+G +  A R++GI VD  +   Y +C +LAA
Sbjct: 185 PVPVWLMVVVFAGAWYLLNHTRFGRYVYAVGGNESATRLSGINVDRVKIGVYAICGLLAA 244

Query: 224 IAGYLLASFSGGAALNMGSEYLLMSIAVVVIGGTAVSGGDSNVPGIWGASLFMFLVVSML 283
           +AG ++ S    A    G  Y L +IA VV+GGT++ GG   + G    +L +  + + L
Sbjct: 245 LAGIIVTSRLSSAQPTAGMGYELDAIAAVVLGGTSLMGGKGRIMGTLIGALIIGFLNNAL 304

Query: 284 NTYGFGAGIRLILTGLIIISVILLASGRK 312
           N     +  ++I   ++I+  +L+ +  K
Sbjct: 305 NLLDVSSYYQMIAKAVVILLAVLVDNKNK 333