Pairwise Alignments

Query, 315 a.a., sugar ABC transporter permease from Agrobacterium fabrum C58

Subject, 323 a.a., branched-chain amino acid ABC transporter permease from Herbaspirillum seropedicae SmR1

 Score =  111 bits (277), Expect = 3e-29
 Identities = 93/309 (30%), Positives = 149/309 (48%), Gaps = 19/309 (6%)

Query: 20  AAVWIITVLFTGGASSFGLSHAA----LTFAAFSVIVGIGQMFVITLGPGNIDLCVPATM 75
           A + ++ +L  G  +   LS  +    LT +A ++++ + QM VI      IDL V + +
Sbjct: 3   ALLTVVLILLVGVRAPVFLSAQSMDNLLTDSAITIMLALAQMLVILTR--GIDLSVASNL 60

Query: 76  TLSGTL-ALKFMDVSDSLILPGLLIAILIGIAIGIGNYALIKLLRIPPIIATLS------ 128
            LSG + AL  M      +   +L+A+LIG+ +G+ N  LI  L +PPI+ TL       
Sbjct: 61  ALSGMMSALLAMHFPALPVGVFILMAVLIGLMLGLLNGWLIGYLELPPIVVTLGSMSVYR 120

Query: 129 -MSFIVQSIAIWSNRGLRIKPPETLATFAISSSFGIPNVALVALLLSVIAWLLLDRTFYG 187
            M F++   A  S+R +    P     F ++   G+ ++  +  L  V  W L   T +G
Sbjct: 121 GMVFVLSGGAWVSSRNM----PADFIAFPLARLGGLTHLVWLGALAVVAIWFLARHTRFG 176

Query: 188 RWIAAIGQSTFAARMTGIPVDGTRFVTYVLCAVLAAIAGYLLASFSGGAALNMGSEYLLM 247
           R + AIG    AA   GI   G    TY L   +A +AGYL  +    A   +   + L 
Sbjct: 177 RDLYAIGNDPAAAAYVGIASRGRLLWTYGLSGAMAGLAGYLWVARYAVAYTEIAYGFELT 236

Query: 248 SIAVVVIGGTAVSGGDSNVPGIWGASLFMFLVVSMLNTYGFGAGIRLILTGLIII-SVIL 306
            IA  VIGG +++GG   V G    +LF+ ++ + L         +  LTGL+I+ +V+L
Sbjct: 237 VIAACVIGGVSIAGGVGQVSGAVLGALFLSVINNALPIMRISPFWQSALTGLVILCAVVL 296

Query: 307 LASGRKATR 315
            A G++  R
Sbjct: 297 NARGKQGRR 305