Pairwise Alignments

Query, 536 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 1209 a.a., urea carboxylase from Rahnella sp. WP5

 Score =  134 bits (338), Expect = 2e-35
 Identities = 113/315 (35%), Positives = 149/315 (47%), Gaps = 37/315 (11%)

Query: 229 EVLAAPMPAIFQDL-GRFGQTGQGVSASGALDRGAFNGANRIVGNPANTPCLELTLGGFS 287
           EV+A    +  QD  GR G    GV  SG +D  AF  ANRIVGN  +   LE TL G +
Sbjct: 450 EVIAPGTYSSVQDYPGRLGYWDIGVPPSGPMDDFAFRLANRIVGNHPDAAGLEFTLQGPT 509

Query: 288 FKSTSRAVIGITGAPCPVTIKTADRSFVAKTDGPVSLEAGDVVTFGQPPKGMRCYLAVRG 347
            +    AVI +TGA CP T+     S+      PV ++AG  +T G+  +G R YLAVR 
Sbjct: 510 LRFHCDAVIALTGARCPATLDDEAVSYWQ----PVDVKAGQTLTLGRATQGCRTYLAVRN 565

Query: 348 GFDIEPVLGSFATDTLAVVGPDPVGAGAVLPLKSEKAGLSSVSISEIPAFEPPAT----- 402
           GFD+   LGS +T  L   G     AG  L +    A + +VS  E+ A   PA      
Sbjct: 566 GFDVPVYLGSRSTFALGQFGGH---AGRTLRV----ADMLTVSQPELAACTTPAPVGLPQ 618

Query: 403 ---------GEVVTLDVVLGPRA--DWFTQKGIETLTGQLWQVTPQSNRVGIRLAGDVPV 451
                    G++  + V+ GP    D+FT+  I+T     WQV   SNR+G+RL G  P 
Sbjct: 619 AAENIVPPYGDIWNIGVLYGPHGAPDFFTKDAIDTFFAAEWQVHYNSNRLGVRLVGPKPQ 678

Query: 452 -ERKDSAEL---PSE----GTATGAIQIPHSGQPVLFLADHPLTGGYPVIGAVAEYHLDL 503
             R+D  E    PS       A GAI       PV+   D P  GG+     +A+  L  
Sbjct: 679 WARQDGGEAGLHPSNVHDCEYAIGAINFT-GDFPVILTRDGPSLGGFVCPVTIAKAELWK 737

Query: 504 AGQIPVNAKIKFRPI 518
            GQ+    KI+F PI
Sbjct: 738 VGQVKPGDKIRFHPI 752



 Score = 38.5 bits (88), Expect = 1e-06
 Identities = 44/201 (21%), Positives = 82/201 (40%), Gaps = 31/201 (15%)

Query: 12   LVELADLDETLALFASLQSDPVEGIEETVPAARTLMIRFRPEKINVQALAARLASRDLS- 70
            +++LA       L  ++++   +GIEE  P  R+L IR+    ++  AL   L + + S 
Sbjct: 825  VLDLAVRMRIYLLMNAIKAAGQQGIEELSPGVRSLQIRYDSRVLHQTALLQHLLTLENSL 884

Query: 71   ---AKIAPSDNLVEIPVHYDGEDLADVAELTGMSVE----------EVIRRHT--ESEFT 115
               +++     +V +P+ ++        E    +V           + I+R     S   
Sbjct: 885  ADVSQLKIPTRIVHMPMAFEDSATLGAVERYQQTVRAEAPWLPNNVDFIQRTNGLASRED 944

Query: 116  VAFCGFAPGFGYLVGGDPALHVP--------------RRQSPRTRIPAGSVALAGAFSGV 161
            V    F   +  L  GD  L  P              +    RT    G+V + G +  +
Sbjct: 945  VKNIIFDASYLILGLGDVYLGAPCAVPVDPRHRLLSSKYNPARTFTAEGTVGIGGMYMCI 1004

Query: 162  YPQNSPGGWQIIGTTPVKMWD 182
            Y  +SPGG+Q++G T + +W+
Sbjct: 1005 YGMDSPGGYQLVGRT-LPIWN 1024