Pairwise Alignments

Query, 297 a.a., nitrate ABC transporter permease from Agrobacterium fabrum C58

Subject, 538 a.a., ABC transporter permease from Rhodopseudomonas palustris CGA009

 Score =  125 bits (313), Expect = 3e-33
 Identities = 81/266 (30%), Positives = 128/266 (48%), Gaps = 16/266 (6%)

Query: 30  LPRIDLRKWGAAAARNTIPPLVVLAVLLGVWQLLCSAPGSS---LPPPSQVFEESYDLIV 86
           LPR  +  W  ++A   +  LVV   LL +W +       S   LP P+ V++ + +L+ 
Sbjct: 24  LPRFGVPAWLRSSA---LLGLVVPVALLALWSVAAERHWMSSQVLPTPALVWQTAGELLA 80

Query: 87  SPFFHNGSQDIGLGLRVLVSLERVAYGFGLAAIAGIILGAVIGQSVWAMRGLDPIFQVLR 146
                N          + +SL+R+ +GF LAA+AG  LG  +G S      + P F  L 
Sbjct: 81  DNLLSN----------LAISLQRLLFGFTLAALAGGFLGGAMGLSRRVEAAIYPTFIALV 130

Query: 147 TVPPLAWLPLSLAAFQDSNPSAIFVIFITSIWPVIINTAVGVRNIPQDYRNVAKVLRLNQ 206
            VP LAW+P  +          I VI    + PV+I T VGVR++        ++LRL  
Sbjct: 131 QVPTLAWIPFLMMVLGLGEALKIVVIIKAVVTPVVIYTHVGVRDVDPKLLEATRILRLGF 190

Query: 207 LEFFFKIMLPSAAPYIFTGLRIGIGLSWLAIVAAEMLTGGVGIGFFIWDAWNSSRLPDII 266
                 ++LP+A P   TGLR+G+   W ++VA E+L    GIGF +       +L  + 
Sbjct: 191 FRRLGSVILPAALPAFLTGLRLGLAQGWTSLVAVELLASSEGIGFLMVWGRQLFQLDVVF 250

Query: 267 VALAYIGVVGFMLDKLVAALGKVITR 292
           V +  IG+VG ++D+ +  + +   R
Sbjct: 251 VCILVIGIVGLVMDRGLNVVDRAAVR 276



 Score = 82.0 bits (201), Expect = 3e-20
 Identities = 77/284 (27%), Positives = 123/284 (43%), Gaps = 21/284 (7%)

Query: 21  NVVALSPKHLPRIDLRKWGAAAARNTIPPLVVLAVLLGVWQLLCSAPGSS---LPPPSQV 77
           NVV  +    PR  L +   A     +   +  A LL  W    ++   S   LP P+ V
Sbjct: 268 NVVDRAAVRWPRPALAEHRTARGGYRLLSWLFPAGLLAAWAAASASGAISPTMLPSPAAV 327

Query: 78  FEESYDLIVSPFFHNGSQDIGLGLRVLVSLERVAYGFGLAAIAGIILGAVIGQSVWAMRG 137
                  ++     +GS +  +GL    SL+R   G  L A +G ++G  +G +    R 
Sbjct: 328 LS-----VLGHGLADGSFESAMGL----SLQRAFIGLALGAGSGFVVGLAMGLN----RP 374

Query: 138 LDPIFQ----VLRTVPPLAWLPLSLAAFQDSNPSAIFVIFITSIWPVIINTAVGVRNIPQ 193
           LD +F      LR V   AW+PL  A       S I  + I S +P+ +    GV  +  
Sbjct: 375 LDRLFNGTLAALRLVAIFAWIPLLTAWVGLGEASKITFVAIASFFPMQLAAYRGVATLSP 434

Query: 194 DYRNVAKVLRLNQLEFFFKIMLPSAAPYIFTGLRIGIGLSWLAIVAAE-MLTGGVGIGFF 252
                +  LRL  ++    ++LP  AP +F GLR+ +   W+  + AE  +  G GIG  
Sbjct: 435 HLIEASWTLRLGGIDRLRCLVLPGIAPSVFAGLRLALLQCWIGTMGAEYFMPSGGGIGSL 494

Query: 253 IWDAWNSSRLPDIIVALAYIGVVGFMLDKLVAALGKVITRGAAA 296
           +  A    R   ++ A+  IGVV  +L+ + + +    TR  +A
Sbjct: 495 MIGAQQMFRTDVVLAAMVMIGVVAALLNAIGSRIEARATRWRSA 538