Pairwise Alignments

Query, 337 a.a., sugar ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

 Score = 73.2 bits (178), Expect = 8e-18
 Identities = 63/269 (23%), Positives = 125/269 (46%), Gaps = 7/269 (2%)

Query: 14  LAVAMSAAATAPATAAGKFACEPGETYVMNVMVSSHPYWVPVFEGFKQAAKALGCEAVFT 73
           L   +SAA  + + +   F  +  +T  + +   ++P++V + +G +  AK LG   +  
Sbjct: 6   LTTLISAALLSTSVS---FVAQAQDTVAIVLSTLNNPFFVTMKDGAEAKAKELGYNLIVL 62

Query: 74  GTPEYDITKQIASFEQELVKKPKGILLHPMQADPFIEPINKAIASGVSVTTFAADSPKSK 133
            + + D +K++++ E   V+  K IL++P  +D     I  A  S + V T    + + +
Sbjct: 63  DS-QNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASRGE 121

Query: 134 RTAYITSDNVAEAKFAADEIVKKLGEKGEYAVLEN-PGQSNHDLRVTALVDYMGRTYPQM 192
             ++I SDNV   + A   I  K+G   +   LE   G S    R    ++ +  +  +M
Sbjct: 122 VVSHIASDNVVGGEMAGHFIEAKIGSDAKVIQLEGIAGTSAARERGEGFMNAVKGS--KM 179

Query: 193 KLVGRQATNQDANVAYQAVGALLQANPNLGALWIPEAGSAEGATTAVLEAKKKVLILHAD 252
           +L+  Q  + D       +  LL ANP++ A++      A GA  A+  + K V+I+  D
Sbjct: 180 QLLASQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAIQASGKSVMIVGFD 239

Query: 253 ITPATLEHIKQGNIYMSINPNQGVQGFMG 281
            T   +  +++G +  ++     + G +G
Sbjct: 240 GTDDGIAAVERGQLAATVAQQPDMIGAIG 268