Pairwise Alignments

Query, 499 a.a., ribose ABC transporter ATPase from Agrobacterium fabrum C58

Subject, 500 a.a., ribose import ATP-binding protein RbsA from Vibrio cholerae E7946 ATCC 55056

 Score =  433 bits (1114), Expect = e-126
 Identities = 227/499 (45%), Positives = 328/499 (65%), Gaps = 6/499 (1%)

Query: 4   TASALRMRGISKIFPGVKALSNVNFTVEYGRIHAVVGENGAGKSTLMKILSGSYAPTTGT 63
           T + L +  I K FPGVKAL   +  V  GR+ A++GENGAGKSTLMK+L+G Y+   G+
Sbjct: 2   TQAILALSQIEKAFPGVKALDKASLNVYPGRVMALMGENGAGKSTLMKVLTGIYSKDAGS 61

Query: 64  TEIAGVEVQMRRPADAQKLGIRMVHQELNLVPDLTVAENIYLGR---MPHRRFLVDRQAM 120
            E  G  V  + P D+Q  GI ++HQELNL+P LT+AENI+LGR    P  R L D   M
Sbjct: 62  IEYQGQPVSFKGPRDSQLAGISIIHQELNLIPQLTIAENIFLGREMTSPFGRILWDE--M 119

Query: 121 LRKAAAVLKELEAAIDPKARLGDLPISQQQLVEIAKSYSADPRIIVLDEPTSSLSEHETT 180
            RKA  +L  L      K  LG+L + +QQ+VEIAK+ S + ++I++DEPT +L++ ET 
Sbjct: 120 HRKADQLLARLNVKHSAKTLLGELSLGEQQMVEIAKALSFESKVIIMDEPTDALTDTETE 179

Query: 181 ALFSILRKMKSQGIAIIYISHRLKEVLDIADDVTILRDGSMIDTRPAAGITAAEMIRLMV 240
           +LF+++ +++ QG  I+YISHRLKE+ +I DD+T+LRDG  I            +I +MV
Sbjct: 180 SLFNVINELREQGCGIVYISHRLKEIFEICDDITVLRDGKFIGECRVCDTNEDGLIEMMV 239

Query: 241 GREVANVFPKTPSKIGPVAFKVTGLSDGEKFHDVGFDVRSGEILGLTGLVGAGRTEVAQA 300
           GR++   +P+  ++ G ++ +V GL+ G   HDV F ++ GEILG++GL+GAGRTE+ + 
Sbjct: 240 GRKLEEQYPRIAAQQGDISLEVIGLT-GSGVHDVSFTLKKGEILGVSGLMGAGRTELMKV 298

Query: 301 IFGLAPLATGRIEINGKAVTIGSPAAAVKAGVAYVPEDRKGDGIVPSMSVRENISLPVLR 360
           I+G  P   G I +NG+ V   SP   +  G+AY+ EDRKGDG+V  +SV+EN+SL  L 
Sbjct: 299 IYGALPSERGVINLNGRTVNPVSPQDGLANGIAYISEDRKGDGLVLGLSVKENMSLCALD 358

Query: 361 RLSRLGRIGMSRDRGLAAKYTRDFSIVPPDPERRINLLSGGNQQKAIISRWLAAGPKVLI 420
           +LS+  +I  + +      + R F+I  P  E+ I  LSGGNQQK  I++ L   PKVLI
Sbjct: 359 QLSKGVQIRHADEVIAVDDFIRLFNIKTPSREQIIGNLSGGNQQKVAIAKGLMTKPKVLI 418

Query: 421 LDEPTRGVDVGAKAEIHRIIGELVAGGMAVVMISSELPEVMGVCDRVVVMRDGRASSPIA 480
           LDEPTRGVDVGAK EI+++I +  A GM+++++SSE+PEV+G+ DR++VM +GR S    
Sbjct: 419 LDEPTRGVDVGAKKEIYQLINQFKAEGMSIILVSSEMPEVLGMSDRILVMHEGRISGEFM 478

Query: 481 RGDLTEERIMALATGEEPA 499
             +  +E++MA A G  PA
Sbjct: 479 ASEADQEKLMACAVGRNPA 497



 Score = 88.6 bits (218), Expect = 5e-22
 Identities = 64/237 (27%), Positives = 114/237 (48%), Gaps = 24/237 (10%)

Query: 25  NVNFTVEYGRIHAVVGENGAGKSTLMKILSGSYAPTTGTTEIAGVEVQMRRPADAQKLGI 84
           +V+FT++ G I  V G  GAG++ LMK++ G+     G   + G  V    P D    GI
Sbjct: 271 DVSFTLKKGEILGVSGLMGAGRTELMKVIYGALPSERGVINLNGRTVNPVSPQDGLANGI 330

Query: 85  RMVHQELN---LVPDLTVAENIYLGRMPHRRFLVDRQAMLRKAAAVLKELEAAIDPKARL 141
             + ++     LV  L+V EN+ L  +      + +   +R A  V+     A+D   RL
Sbjct: 331 AYISEDRKGDGLVLGLSVKENMSLCALDQ----LSKGVQIRHADEVI-----AVDDFIRL 381

Query: 142 ------------GDLPISQQQLVEIAKSYSADPRIIVLDEPTSSLSEHETTALFSILRKM 189
                       G+L    QQ V IAK     P++++LDEPT  +       ++ ++ + 
Sbjct: 382 FNIKTPSREQIIGNLSGGNQQKVAIAKGLMTKPKVLILDEPTRGVDVGAKKEIYQLINQF 441

Query: 190 KSQGIAIIYISHRLKEVLDIADDVTILRDGSMIDTRPAAGITAAEMIRLMVGREVAN 246
           K++G++II +S  + EVL ++D + ++ +G +     A+     +++   VGR  A+
Sbjct: 442 KAEGMSIILVSSEMPEVLGMSDRILVMHEGRISGEFMASEADQEKLMACAVGRNPAH 498