Pairwise Alignments

Query, 358 a.a., HlyD family secretion protein from Agrobacterium fabrum C58

Subject, 382 a.a., membrane efflux protein from Sinorhizobium meliloti 1021

 Score =  140 bits (352), Expect = 7e-38
 Identities = 114/358 (31%), Positives = 168/358 (46%), Gaps = 15/358 (4%)

Query: 5   LIAAALGGIFALA------SCSSEEPPAEKPLRTVDVVAAEKKPVDRGSVITGEVRARVQ 58
           L+AAA G  FA           S +P    PL  V   A   +P       TG + ARVQ
Sbjct: 23  LVAAAAGAAFAFVFETPARDAESADPRLAPPLVRV---AEATRPERAERAFTGTIAARVQ 79

Query: 59  TDLSFRVSGKIIERLVDVGARVKTGQLLARIDPEEQKADIDVALANLQSAEAQQTQAQLT 118
           ++L FRV GKI+ERLVDVG +VK GQ L RID  + +  +      + +A A   QA   
Sbjct: 80  SNLGFRVPGKIVERLVDVGQQVKAGQALMRIDETDLRLALTAKRNAVAAARAVLVQAIAD 139

Query: 119 FDRQQNLFKTQVTSR-SAVDKAQETLLTTQGAVRSAQAQLDTARDALSYTELRADADGVI 177
             R   L K  V +     ++A+  L T    + +A+A+   A +  +Y+ L A ADG +
Sbjct: 140 ERRYATLVKGGVAATPQRYEQAKAALDTAAAQLAAAEAEARVAENETTYSVLVAGADGTV 199

Query: 178 TARNVEVGQVAQAAQLVFTLAHDGPRDAVFDVYESLFLERDIDNLVNVSLLSDPAQIVAA 237
            A   E GQV  A Q V  LAH G R+A+  + E+  +   I +    S+     +   A
Sbjct: 200 VATLGEPGQVVAAGQAVVQLAHAGLREALVALPET--VRPAIGSEAEASVYGSDGRRGRA 257

Query: 238 PVREISPTIDPDNGTIRVKVGLNGD-MTMPLGAPVSGHFRFRQIDA-IELPWSAMASQDG 295
            +R+IS   DP   T   +  L+GD  + PLGA V+   R  +  + + +P  A+ +   
Sbjct: 258 RMRQISDAADPQTRTYEARYVLDGDAASAPLGATVTISIRNGEGQSEVAVPVGAVLNDGS 317

Query: 296 APAVWLVDPRSSEVAMRPVQVADYETGQFVVTEGLNPGDLVVTVGTKFLRAGEKVAYE 353
              VW+VD  S+     P+++         VT G+  G+ VV +G   L+ G  V  E
Sbjct: 318 RTGVWVVDQASATARFVPIEIKRLGEETASVT-GIELGEQVVALGAHLLKDGAPVRTE 374