Pairwise Alignments

Query, 361 a.a., efflux protein from Agrobacterium fabrum C58

Subject, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  108 bits (271), Expect = 2e-28
 Identities = 96/356 (26%), Positives = 171/356 (48%), Gaps = 30/356 (8%)

Query: 10  LLIPAIALSSCQEKQEAAAEAP--RPVLSVVVEEKLADALRLTGTVESRIKTDLGFRVLG 67
           ++  A+ L+ C E  + +A AP  +P L+ +V  + A  L   G V +  + DL FR+ G
Sbjct: 19  VIASALLLAGCGEAPQISAPAPVVKPALTEIVASQRASDLTFNGVVRAAQRADLAFRISG 78

Query: 68  RIIARNVDVADLVKKGDVVASIDPLALELSVKSAQSDLSNAEAQLANAVTTEQRQRVLAE 127
           R+    V   D VKKG ++AS+D    + ++++AQ +L N E +   A    ++ +    
Sbjct: 79  RLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRAKAIFEKTQ---- 134

Query: 128 ARSGTEAALEEAEQAMRTANAAVAKARANLDKAEEQLGYAQLRAEFDGVVTATSGEIGQV 187
                  A+ +AE    T    +AK R  +++A+ +L Y Q+ A FDGV++  + E    
Sbjct: 135 -------AISKAELDKVTNRYDLAKNR--VEEAKRKLEYTQITAPFDGVISEKTIENFAQ 185

Query: 188 VSAGQTVVTIARPEVRDVVVDVPQFAAQRLEIGSTFEIA-LQLDPKIHMTGVVREIAPEA 246
           V A Q ++ +      +V +++P        + +T  IA L   P       +R  + + 
Sbjct: 186 VQANQVIMILQDLNDLEVAIEIPH-RVMLSGVRNTRAIAELSAIPNQQFDLKLRTYSTQP 244

Query: 247 ETATRTRRTKISLQDAPQAFRLGSVVTALALAASEPQ------ITLPASALLKTDSG-WG 299
            + ++T    +  +D  + FR+   ++A  +  ++        ITLP +AL+  + G   
Sbjct: 245 SSDSQTYSVVLGFEDL-KGFRVMPGMSAKVIPVADKPADENTLITLPLTALVPDNQGKQF 303

Query: 300 VWIVNA-DTATVTYRPVTIDGEPAEGGSVRITGGIKPGERVASAGVHKLKDGQAIR 354
           VW+VNA + A   Y    +D        V IT  +KPGE+V  AGV  +++G  +R
Sbjct: 304 VWVVNAQNQAEKRY----VDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTVR 355