Pairwise Alignments

Query, 361 a.a., efflux protein from Agrobacterium fabrum C58

Subject, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  100 bits (249), Expect = 6e-26
 Identities = 92/371 (24%), Positives = 166/371 (44%), Gaps = 32/371 (8%)

Query: 3   RINRSLFLLIPAIALSSCQEKQEAAAEAPRPVLSVVVEEKLADALRLTGTVESRIKTDLG 62
           +I R    L   + ++ C E  +   +    V      EK++D L       +  ++ L 
Sbjct: 12  KIIRYTAWLAHLLLIAGCSEPTKLERDTLPRVKVAQAGEKVSDKLFFPAVANAAERSHLS 71

Query: 63  FRVLGRIIARNVDVADLVKKGDVVASIDPLALELSVKSAQSDLSNAEAQLANAVTTEQRQ 122
           FRV G I   +V     VK+GD++A I+P    L+V +AQ+  S  ++Q   +    ++ 
Sbjct: 72  FRVAGEISKFHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVIDSQYRRSQPLVEK- 130

Query: 123 RVLAEARSGTEAALEEAEQAMRTANAAVAKARANLDKAEEQLGYAQLRAEFDGVVTATSG 182
            +LA+++    AA  +              ARA L+ A+ +L + QLRA  DG+++  S 
Sbjct: 131 GLLAKSQFDEIAAQRQI-------------ARAELELAKLRLSFTQLRAPMDGIISRVSA 177

Query: 183 EIGQVVSAGQTVVTIARPEVRDVVVDVPQ--FAAQRLEIG-STFEIALQLDPKIHMTGVV 239
           E  + V  GQ +V I   +  +V++ +P   +A Q      +  E  +++         +
Sbjct: 178 EQFESVQVGQQIVNIHNIDSVEVLIQLPDRLYATQPTASELAKIETVVRVPSGQVYPARI 237

Query: 240 REIAPEAETATRTRRTKISLQDAPQAFRLGSVVTALALAASE------PQITLPASALLK 293
           +E   E + AT T    +SL    Q   L  +   ++             I++P  A+  
Sbjct: 238 KEFTTEPDPATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAIFN 297

Query: 294 TD------SGWGVWIVNADTATVTYRPVTIDGEPAEGGSVRITGGIKPGERVASAGVHKL 347
            D      +   VW++N D  TV+ R V +    A    V+++ GI  G+R+  AGV +L
Sbjct: 298 ADGDELDKTAQYVWLLNNDN-TVSKRQVRL--AKASRSHVQVSEGINAGDRLVVAGVARL 354

Query: 348 KDGQAIRIDQE 358
           +DG  +++ +E
Sbjct: 355 RDGMKVQVLEE 365