Pairwise Alignments

Query, 361 a.a., efflux protein from Agrobacterium fabrum C58

Subject, 376 a.a., Secretion protein HlyD from Synechococcus elongatus PCC 7942

 Score =  105 bits (262), Expect = 2e-27
 Identities = 88/349 (25%), Positives = 157/349 (44%), Gaps = 12/349 (3%)

Query: 15  IALSSCQEKQEAAAEAPRPVLSVVVE----EKLADALRLTGTVESRIKTDLGFRVLGRII 70
           + ++SCQ +Q AA + P P L V V     E + D     G +E+  +T L  ++ GRI+
Sbjct: 23  MGVASCQGRQPAAFQGP-PALPVDVTKATVETVNDLTEYLGALEATEQTILRPQIQGRIV 81

Query: 71  ARNVDVADLVKKGDVVASIDPLALELSVKSAQSDLSNAEAQLANAVTTEQRQRVLAEARS 130
           +  V    +V  G  +  +D   +E  V +A ++++  EAQL +A  T +RQ+ LA+   
Sbjct: 82  SVAVQPGQIVSVGQPMFVLDSEQVEADVAAANAEVARQEAQLRDAKITFERQKFLADQGV 141

Query: 131 GTEAALEEAEQAMRTANAAVAKARANLDKAEEQLGYAQLRAEFDGVVTATSGEIGQVVSA 190
                L+ A + ++TA A +  A+ N       + Y  +RA  +G+V     +IG  V  
Sbjct: 142 VPLQNLDNARRELQTAQAQLKAAQQNAVAKSVNVQYKTVRAPINGLVGDIRLKIGDFVDT 201

Query: 191 GQTVVTIARPEVRDVVVDVPQFAAQRLEIGSTFEIALQLDPKIHMTGVVREIAPEAETAT 250
           G  + TI R     + + VP     +L  G   ++       I  TG V  ++P  +   
Sbjct: 202 GAELTTITRNNQLFINIPVPTVRIPQLRKGQPVKLLDPFSKNILATGAVDFVSPVVQQNL 261

Query: 251 RTRRTKISLQDAPQAFRLGSVVTALALAASEPQITLPASALLKTDSGWGVWIVNADTATV 310
           +T   K+ + +A    R G +V +  +   +  + +P  A+        V++V     + 
Sbjct: 262 QTVLVKVVVPNADGLIRNGQIVQSEIVWDRKEAVLVPTQAVTPLAGANFVYVVEPKPNSP 321

Query: 311 TYRPVTIDGEPAEGGSV-----RITGGIKPGERVASAGVHKLKDGQAIR 354
                 +  +  E GS+     +I  G+KPGE VA+  +  L D   ++
Sbjct: 322 D--QFQVRQQKVELGSIFNNRYQIRSGLKPGETVATTNLLSLTDKATVK 368