Pairwise Alignments
Query, 1023 a.a., AcrB/AcrD/AcrF family protein from Agrobacterium fabrum C58
Subject, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056
Score = 273 bits (698), Expect = 5e-77
Identities = 243/1034 (23%), Positives = 454/1034 (43%), Gaps = 67/1034 (6%)
Query: 6 LSDWALEHRSLVWYFMLVFVLAGVFSYLNLGREEDPNFTIKTMVISAQWPGASAEEVARQ 65
LSD +++ ++ + GV S+ L E P+ + +S ++ GASA + Q
Sbjct: 3 LSDVSVKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIESQ 62
Query: 66 VTDRIEKKLEELDNLDHLRSQTVAG--RTTIFVELVPETKARNVEPTWVRVRNMIGDIKG 123
+T +E +L + +D + S + G R T+ EL + + +R+ + +
Sbjct: 63 ITSVLEDQLAGISGIDEITSVSRNGMSRITVTFELGYDLNTGVSD-----IRDAVARAQR 117
Query: 124 EFPSGVVGPFFNDRFGDVYGNIYA-FTSDGLSQRQLRDLVEDARA-KVLTVDDIGKVDVI 181
P P G ++Y +S + + QL D +E + + + VDV
Sbjct: 118 SLPEEADDPQVFKNNGSGQASVYINLSSSEMDRTQLTDYIERVLLDRFSLISGVSSVDVS 177
Query: 182 GAQDEAIYLEFSTRQIAALGIDQQSIIKTLQSQNAVTQSGFVNAGPERVALRVSGQFTSE 241
G + +Y+ +A G+ I L +N + G V +++R + + S
Sbjct: 178 GGLYKVMYVRIKPELMAGRGVATSDISDALNKENLESPGGQVRNDSTVMSVRTARGYQSA 237
Query: 242 DSLRSINLRVNNRFFP--LTEVATIRRGYVDPPSSLFRFNGQPAIGLAIGMKTGANLLHF 299
+ + ++ + P L +VA + G + +S F+ +G + + I ++ AN L
Sbjct: 238 EDFEYLVVKRASDGTPIYLKDVADVFIG-AENENSTFKSDGIVNVSMGIVPQSDANPLEV 296
Query: 300 GEALDAQMKRVVADLPVGVDVHRVSDQPAVVDEAVSGFTSALFEAIAIVLVISFISLG-L 358
+ + ++ +V LP G + D ++ ++S S LF +V+++ +I +G L
Sbjct: 297 AKRVHEEVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFIGQL 356
Query: 359 RAGMVVAVSIPLVLAITFVYMEYTGISLQRISLGALIIALGLLVDDAMIAVEMMVARLEV 418
RA ++ AV++P+ L F+ Y G S+ I+L ALI+++GL+VDDA++ VE + +E
Sbjct: 357 RATLIPAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHHIER 416
Query: 419 GDDLRKAATYVYTSTAFPMLTGTLVTVAGFIPVGLNNSAAGEFTFTLFVVIAVSLIVSWI 478
G+ AA F ++ TLV V F+P+ + G V++A+++I S +
Sbjct: 417 GEKPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSSL 476
Query: 479 VAVLFTPLLGVTILPKTMKSHHEKK------GRFASGFSWLLGRALRWRWVTIVATVALF 532
+A+ TP+LG +L +K + R SG+ ++ RA+RWRW V A
Sbjct: 477 IALTLTPVLGSKLLKANVKPGRFNQLIDRLFARLESGYRQVVSRAIRWRWAAPVVIAACI 536
Query: 533 ALSIGGMSLVQQQFFPSSDRVELIVDWNLPQNSSIAETNRQMAQFEQEMLAKNTDI--DH 590
S G M LV Q PS DR V ++ + + NR +A N D+
Sbjct: 537 GGSYGLMQLVPAQLTPSEDRG---VIFSFVRGADATSYNR---------MAANMDLVEQR 584
Query: 591 WTTYVGEGAPRFILSFDVQTPDVTFGQTVIVTKGLDVRDKVRAELQDYLDRTFIGTDAF- 649
+G+G F+ SF +Q+P FG G V L+D+ DRT +A
Sbjct: 585 LMPLLGQG---FLKSFSIQSP--AFGGNAGDQTGF-----VIMILEDWNDRTVTAQEALS 634
Query: 650 -----------VKLLDIGPPV----GKPVQYRLSGPDIQKVRELGQQLSGIVGEHRLLSN 694
V++ P +PVQ+ L G D +++ ++L + ++
Sbjct: 635 QVRKALAGIPDVRVFPFMPGFRGGSNEPVQFVLGGSDYSELKTWAEKLEEEAEKSPFMTG 694
Query: 695 LVMDWNEPTRVVKVDVLQDKARQLGVSSEDIANAMNSIVEGSTVTQVRDDIYLVNVVARA 754
+D++E T + V + + +A +LG+S + I++ + ++ G VT + +V R
Sbjct: 695 ADIDYSEKTPELVVTIDKQRAAELGISVKSISDTLEVMLGGKKVTTFVERGEEYDVYLRG 754
Query: 755 QLAERGSIETLQNLQLPATNGKAVPLSAIANFRYELEQPTIWRRDRIPTVTVKAAIIGPT 814
+ L + + G+ V L + + ++ +VT+ A +
Sbjct: 755 DENSFNNAADLSQIYMRTATGELVTLDTVTRIDEVASAIRLAHYNKQKSVTITANLEAGY 814
Query: 815 QPATIVEQLKPKLEAFEKMLPVGYKLETGGSVESSADSQAPIVAVVPLMLFAMATILMVQ 874
++ L K +++LP + G + ++Q+ + V L L +L Q
Sbjct: 815 TLGQALDFLDQKA---QEILPNDISVSYSGESKDFKENQSSVAIVFALALLVAYLVLAAQ 871
Query: 875 LQSFSRLFLVFAVAPTALIGVVVALLFSNAPMGFVAILGVLALIGILIRNSVILVVQIEH 934
+SF +V P + G + L M + +G++ LIG++ +N +++V
Sbjct: 872 FESFINPLVVMLTVPMGVFGGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFANQ 931
Query: 935 LRSEGVSAWRAVIEATEHRMRPIMLTAAAATLALIPISREIFWGPMAYAMMG-----GIV 989
LR GV +A+I+A+ R+RPI++TA IP+ G + +G G+
Sbjct: 932 LRDRGVEFEKAIIDASARRLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMG 991
Query: 990 VGTALTLLFLPALY 1003
T +TLL +PA+Y
Sbjct: 992 FATLVTLLVIPAMY 1005
Score = 49.3 bits (116), Expect = 1e-09
Identities = 70/317 (22%), Positives = 132/317 (41%), Gaps = 23/317 (7%)
Query: 195 RQIAALGIDQQSIIKTLQSQ-NAVTQSGFVNAGPER-VALRVS-GQFTSEDSLRSINLRV 251
++ A LGI +SI TL+ + FV G E V LR F + L I +R
Sbjct: 713 QRAAELGISVKSISDTLEVMLGGKKVTTFVERGEEYDVYLRGDENSFNNAADLSQIYMRT 772
Query: 252 NNRFFPLTEVATIRRGYVDPPSSLFR---FNGQPAIGLAIGMKTGANLLHFGEALDAQMK 308
L + T+ R +D +S R +N Q ++ + ++ G L G+ALD +
Sbjct: 773 ATG--ELVTLDTVTR--IDEVASAIRLAHYNKQKSVTITANLEAGYTL---GQALDFLDQ 825
Query: 309 RVVADLPVGVDVHRVSDQPAVVDEAVSGFTSALFEAIAIVLVISFISLGLRAG-----MV 363
+ LP + V + + S++ A+ L+++++ L + +V
Sbjct: 826 KAQEILPNDISVSYSGESKDFKENQ-----SSVAIVFALALLVAYLVLAAQFESFINPLV 880
Query: 364 VAVSIPLVLAITFVYMEYTGISLQRISLGALIIALGLLVDDAMIAVEMMVARLEVGDDLR 423
V +++P+ + F+ + G + S +I+ +G++ + ++ VE + G +
Sbjct: 881 VMLTVPMGVFGGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFANQLRDRGVEFE 940
Query: 424 KAATYVYTSTAFPMLTGTLVTVAGFIPVGLNNSAAGEFTFTLFVVIAVSLIVSWIVAVLF 483
KA P+L T+AG IP+ ++ A E + VI + + +V +L
Sbjct: 941 KAIIDASARRLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLVTLLV 1000
Query: 484 TPLLGVTILPKTMKSHH 500
P + I T H
Sbjct: 1001 IPAMYRLISGSTQAPGH 1017