Pairwise Alignments

Query, 900 a.a., two component sensor kinase from Agrobacterium fabrum C58

Subject, 956 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  119 bits (297), Expect = 1e-30
 Identities = 105/325 (32%), Positives = 160/325 (49%), Gaps = 44/325 (13%)

Query: 592 RGADTLPGAKRLYLPLRTGSGAVGVVGLDDDR-------SGPLLTPEQQRLFDALADQ-- 642
           R  D +P A RL  PL           LDDD        SG L T E   L DAL  +  
Sbjct: 371 RHPDEVPSA-RLLRPLL----------LDDDELAALASGSGELRTTEVA-LTDALGTEHW 418

Query: 643 ----------AALAVERIQLASDVDRARLAAETDRLRTALLTSISHDLKTPLAAILGSAG 692
                     +A     + +A DV   R     ++++T  ++++SH+L+TPL AI G+ G
Sbjct: 419 FQVIKRPLRTSARTCHVVTVAVDVSLRR---RMEQMKTEFISTVSHELRTPLTAIRGALG 475

Query: 693 TL-KDFADDIPPDARAELLSTIVEESERLNRFISNLLDMTRIGSGAMEPNYGLHFLGDMV 751
            L    A  +  +AR  LL    + SERL R I+++LD+ ++ +G +  N+G H +  +V
Sbjct: 476 MLIGGIAGQVSDEARP-LLGIAHKNSERLVRLINDILDIEKLEAGRLTFNFGRHDVRPLV 534

Query: 752 GTALSRAAKIVVRHEVVLDIPSDLPMLK-----VDPVLFEQVLFNLIDNAAKYAPEHTTI 806
             ALS        + V L+   D P L      +DP  F QV+ NL+ NA K++P    +
Sbjct: 535 QQALSDITPYGQDYGVSLEF-LDAPELTSSEATLDPDRFAQVMANLLSNAIKHSPAGGCV 593

Query: 807 AIRGWRQGKNIFLSVADEGPGIPPDDLERVFDSFYRVRKVDHVQ-AGTGLGLSICKGFIE 865
            +   R+GK + + V D GPGIP     R+F+ F +    D  Q  GTGLGL+I +  ++
Sbjct: 594 TVDLRRRGKLLEIGVQDRGPGIPEAFRSRIFERFAQADSSDARQRGGTGLGLAITRSLVQ 653

Query: 866 AMGGSIRAENRADRGGAQFTIGLPV 890
            M G I  + + D+ G +F + LP+
Sbjct: 654 QMHGKIGFDCQPDQ-GTRFWLQLPL 677