Pairwise Alignments

Query, 302 a.a., diguanylate cyclase from Agrobacterium fabrum C58

Subject, 485 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  103 bits (258), Expect = 6e-27
 Identities = 59/170 (34%), Positives = 93/170 (54%), Gaps = 2/170 (1%)

Query: 129 RQDRDLAVRASQTDELTGTANRRFVFAKLALQVEQVSKGLEAPFCLCTLDIDFFKQINDR 188
           R  R L + AS TD+LTG ANR+ VF +   Q    +K  +    +  +DID FK++ND 
Sbjct: 315 RYQRKLEIMAS-TDKLTGAANRQ-VFEEYFHQALDKAKLSQTSISILLIDIDHFKKVNDS 372

Query: 189 FGHKCGDAVLRDFVGIAHSVIRRVDCFGRIGGEEFMLILPRSSIAEGREIVERLLQKVRL 248
           +GH  GD VL+    +  S ++  D   R GGEEF+++LP   ++   E+ ER    +  
Sbjct: 373 YGHSVGDLVLKTVTNLLRSQLKPQDILCRWGGEEFLVLLPEMDLSRAAELAERFRDSISQ 432

Query: 249 SRPLSEFPDFSYSCSAGMTVFRMMENADDVFMRADQALYAAKEKGRDRLL 298
                     + + S G+  ++ +E A+D+  RAD ALY AKE GR++++
Sbjct: 433 RELKVNGVHIAITVSIGVAEYQKLEPAEDLIKRADLALYQAKEAGRNQVV 482