Pairwise Alignments

Query, 513 a.a., sigma 54 dependent transcriptional activator from Agrobacterium fabrum C58

Subject, 466 a.a., nitrogen regulation protein NR(I) from Vibrio cholerae E7946 ATCC 55056

 Score =  288 bits (736), Expect = 4e-82
 Identities = 186/501 (37%), Positives = 271/501 (54%), Gaps = 45/501 (8%)

Query: 4   HVLVIDDDPVQRRLLKNAVERYGHLALLAENGRAGLELLKQYSGEINVIVLDLMMPEMDG 63
           +V V+DDD   R +++  +           +  + L  L++ + +  V+V D+ MP MDG
Sbjct: 5   YVWVVDDDSSIRWVMEKTLSSAHIKCETFADAESVLLALERETPD--VLVSDIRMPGMDG 62

Query: 64  LAFLKAVGELGTDVPVIVQTGQGGIDTVVQAMRAGAFDFVVKPVSPERIGAAISNALKLD 123
           +A L  V +   ++PVI+ T    +D  V A + GAF+++ KP   +     +  A+   
Sbjct: 63  IALLNQVHQRTPELPVIIMTAHSDLDAAVNAYQQGAFEYLPKPFDVDETLTLVERAIAHG 122

Query: 124 RKEAKARTGRRGRSNAVNFTDIVSASPAMLRVIELAQRAAQSSIPVVLEGESGVGKEMVA 183
           +++ K  T  R   N  +  +I+  +PAM  V     R ++SSI V++ GESG GKE+VA
Sbjct: 123 QEQRK--TSHRPSEN-YSAPEIIGEAPAMQEVFRAIGRLSRSSISVLINGESGTGKELVA 179

Query: 184 RAIQSGGDRANKPFITVNCGAIPHNLVESILFGHEKGAFTGATEKHVGKFMEADGGTLFL 243
            A+     RA KPFI +N  AIP +L+ES LFGHEKGAFTGA     G+F +A+GGTLFL
Sbjct: 180 HALHRHSPRAQKPFIALNMAAIPKDLIESELFGHEKGAFTGANTVRQGRFEQANGGTLFL 239

Query: 244 DEIGDLPLDVQVKLLRAVQQGEIETVGSARVQKVNVRLISATNKNLIEEVKEGRFREDLY 303
           DEIGD+PLD+Q +LLR +  G+   VG     KV+VR+++AT++NL + V +G+FREDL+
Sbjct: 240 DEIGDMPLDIQTRLLRVLADGQFYRVGGHVAIKVDVRIVAATHQNLEKLVHQGKFREDLF 299

Query: 304 YRLNVFPITIPALRRRKEDIPHLARVF----AERFSAEQKLPNPVGLDASALALLTAYDW 359
           +RLNV  I IP+LR R++DI  L + F    A+    E K  NP  +D     +LT  DW
Sbjct: 300 HRLNVIRIHIPSLRERRQDIEKLTKHFLALAAKELGVEMKTLNPRTVD-----ILTKLDW 354

Query: 360 PGNIRQLENAVFRAVVLSQGSELSDSDFPQIALQLPEFSNGDDGDDIIRSPSGSSLKLAA 419
           PGN+RQLEN      V++ GSE+  SD P   L   + S+ D  +DI        L+  A
Sbjct: 355 PGNVRQLENMCRWLTVMASGSEVLPSDLPSELLSERKASHFD--NDISWQ---KQLETWA 409

Query: 420 YSPPPAAESHAVIEEPSDISTTIYRGGNLISSTDDSGNIRKLAEIEEELIRFALRFYRGQ 479
            S   + E+  +                             L E E  L+  AL    G 
Sbjct: 410 KSALASGETELL--------------------------AYALPEFERILLEAALHHTNGH 443

Query: 480 MSQVARKLGIGRSTLYRKLKD 500
             + A+ LG GR+TL RKLK+
Sbjct: 444 KQEAAKVLGWGRNTLTRKLKE 464