Pairwise Alignments

Query, 599 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

 Score =  320 bits (819), Expect = 1e-91
 Identities = 197/574 (34%), Positives = 308/574 (53%), Gaps = 15/574 (2%)

Query: 21  LFPYLRRYRGLMAAALFALVLSSATTLALPLAVRRIIDHGFQTPDGGMINSYFAMLLAIA 80
           L+ Y+R Y+  +  +  ALV+++A    +   ++ ++D GF   +   +     M+L + 
Sbjct: 16  LWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLM 75

Query: 81  VVLALASAMRYYYVMTIGERVVADLRRDVFAHLTTLSQQFFDSNRSGELTSRLTADTVQI 140
            V  L+     Y +  +   VV  +RR +F H   +  +FFD   +G L SR+T D+ Q+
Sbjct: 76  FVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQV 135

Query: 141 RSAFGSSASVALRNIIMCCGAVAMMIYTSPGLSGLALLAIPFIVFPLIAFGRSVRARSRT 200
             A   +    +R      G + +M + S  LS + ++  P + F +    +  R  SR 
Sbjct: 136 AGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRN 195

Query: 201 TQDTLANSAAYASETIAASRTVQSFNAEVLANARYGASVEAAYQGARAAIGARSVLTAVA 260
            Q  + +  + A + +   + V S+  + +   R+     +  Q     + A+S+   V 
Sbjct: 196 MQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVI 255

Query: 261 IALVFGSVVGILWYGAQNVLAGSMTAGTLGQFVLYSVIAA--SGLGQLSEVWGELAQAGG 318
             +   ++  +L+  + + +   +T GT    V++S +      L  L+ V  E  +   
Sbjct: 256 QMIASLALFAVLFLASVDSIRAELTPGTFT--VVFSAMFGLMRPLKALTSVTSEFQRGMA 313

Query: 319 AAERLSELLN---ERSPVAEPAAPVAMPQPPRGEAEFDNVDFVYPLATGRPIVSGLSLKV 375
           A + L  L++   ER      A  V       GE +  +V F Y     +P +S +S  +
Sbjct: 314 ACQTLFGLMDLETERDNGKYEAERV------NGEVDVKDVTFTYQ-GKEKPALSHVSFSI 366

Query: 376 AAGETVAIVGPSGAGKSTVFSLLMRFYDPQQGRITIDGVDIRNVSLADLRARLSIVPQDV 435
             G+TVA+VG SG+GKST+ +L  RFYD   G I +DG D+R+  L +LR   ++V Q+V
Sbjct: 367 PQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNV 426

Query: 436 AIFASSIHDNIAFGRP-EATREDVRAAAIAAQADGFIERLGDGYDTQVGERGVTLSGGQR 494
            +F  +I +NIA+    E TRE +  AA  A A  FIE +  G DT +GE G +LSGGQR
Sbjct: 427 HLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQR 486

Query: 495 QRIAIARAILRDAPILLLDEATSALDAESETLVQKALDELMKTRTTIVIAHRLATVLKAD 554
           QR+AIARA+LRDAP+L+LDEATSALD ESE  +Q ALDEL K +T +VIAHRL+T+ +AD
Sbjct: 487 QRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQAD 546

Query: 555 RILVMDEGRIIEEGTHQSLIRQNGLYARLARLQF 588
            ILV+DEG IIE G H  L+ Q+G YA+L R+QF
Sbjct: 547 EILVVDEGEIIERGRHADLLAQDGAYAQLHRIQF 580