Pairwise Alignments

Query, 346 a.a., Holliday junction DNA helicase RuvB from Agrobacterium fabrum C58

Subject, 334 a.a., Holliday junction branch migration DNA helicase RuvB from Vibrio cholerae E7946 ATCC 55056

 Score =  397 bits (1021), Expect = e-115
 Identities = 202/333 (60%), Positives = 252/333 (75%), Gaps = 4/333 (1%)

Query: 1   MSDADRLITPE----KRGEDIDTTLRPQSLDDFTGQAEARANLKVFIEAAKNRGEALDHV 56
           M +ADRLI P     K  E ID  +RP+ L D+ GQ   R  +++FI+AA+ R EALDH+
Sbjct: 1   MIEADRLIAPISNHFKDEEVIDRAIRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHL 60

Query: 57  LFVGPPGLGKTTLAQIMAKELGVNFKSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRL 116
           L  GPPGLGKTTLA I+A E+GVN ++TSGPV+ KAGDLAALLTNLEE DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 117 NPAVEEILYPAMEDFQLDLIIGEGPAARSVKIDLSKFTLVAATTRLGLLTTPLRDRFGIP 176
           +P VEE+LYPAMED+QLD++IGEGPAARS+KIDL  FTL+ ATTR G LT+PLRDRFGI 
Sbjct: 121 SPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIV 180

Query: 177 VRLAFYTVDELELIVRRGARLMGLNMTDGGAREIARRARGTPRIAGRLLRRVRDFAEVAR 236
            RL +Y V +L+ IV+R A+ +GL+M   GA E+ARRARGTPRIA RLLRRVRD+AEV  
Sbjct: 181 QRLEYYKVADLQHIVQRSAQCLGLSMDSEGALEVARRARGTPRIANRLLRRVRDYAEVKG 240

Query: 237 AEAVTREIADEALTRLLVDNMGLDQLDMRYLTMIAVNFGGGPVGIETIAAGLSEPRDAIE 296
              +  + AD AL  L VD+ G D +D + L  I   F GGPVGI+ +AA + E +D IE
Sbjct: 241 DGHICAQTADRALNMLDVDHQGFDYMDRKLLLAIMEKFSGGPVGIDNLAAAIGEEKDTIE 300

Query: 297 DIIEPYMIQQGFIQRTPRGRILTATAWKHLGLQ 329
           D++EP++IQQG++QRTPRGRI T  A+ H G++
Sbjct: 301 DVLEPFLIQQGYLQRTPRGRIATDRAYLHFGIE 333