Pairwise Alignments

Query, 648 a.a., metalloprotease from Agrobacterium fabrum C58

Subject, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis S2

 Score =  210 bits (535), Expect = 2e-58
 Identities = 104/229 (45%), Positives = 157/229 (68%), Gaps = 2/229 (0%)

Query: 155 VTFDDVAGVDEAKQDLEEIVEF-LRDPQKFQRLGGKIPRGVLLVGPPGTGKTLLARSVAG 213
           + + DV G+++ KQDL+E VE+ +++ + F+R+G + P+GVLL GPPGTGKTLLA++VA 
Sbjct: 504 IKWSDVGGLEDIKQDLKEAVEWPIKNKEMFERMGIRPPKGVLLFGPPGTGKTLLAKAVAN 563

Query: 214 EANVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCIIFIDEIDAVGRHRGAGLGGG 273
           E+   F ++ G +    +VG     +R++F +A++ AP +IF DEID+V   RG   G  
Sbjct: 564 ESEANFISVKGPEIFSKWVGESEKAIREIFRKARQAAPTVIFFDEIDSVAPKRGMDFGSS 623

Query: 274 NDEREQTLNQLLVEMDGFEANEGIILIAATNRPDVLDPALLRPGRFDRQVVVPNPDIVGR 333
               E+ +NQLL E+DG E  + +++IAATNRPD+LD ALLRPGR DR V+VP P+   R
Sbjct: 624 G-VTEKVVNQLLTELDGLEEPKDVVIIAATNRPDILDQALLRPGRLDRIVLVPIPNETAR 682

Query: 334 ERILKVHVRNVPLAPNVDLKILARGTPGFSGADLMNLVNEAALMAARRN 382
             I KVH + +P+  +V+L+ LA+ T G++GAD+  +  EAA++A R N
Sbjct: 683 LEIFKVHTKGMPIGKDVNLEKLAKETKGYTGADIEAVCREAAMIALREN 731



 Score =  183 bits (465), Expect = 2e-50
 Identities = 102/263 (38%), Positives = 160/263 (60%), Gaps = 29/263 (11%)

Query: 155 VTFDDVAGVDEAKQDLEEIVEF-LRDPQKFQRLGGKIPRGVLLVGPPGTGKTLLARSVAG 213
           VT++D+ G+ E  + + E+VE  +R P+ F +LG + P+GVLL GPPGTGKTLLA++VA 
Sbjct: 174 VTYEDIGGLKEEVKKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPGTGKTLLAKAVAN 233

Query: 214 EANVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCIIFIDEIDAVGRHRGAGLGGG 273
           EA   F+TI+G + +  +VG     +R +FE+A++N+P IIFIDEIDAV   R    G  
Sbjct: 234 EAGANFYTINGPEIMSKYVGETEENLRKIFEEAEENSPSIIFIDEIDAVAPKRDEASG-- 291

Query: 274 NDEREQTLNQLLVEMDGFEANEGIILIAATNRPDVLDPALLRPGRFDRQVVVPNPDIVGR 333
            +   + + QLL  MDG E+   ++++AATNRPD +D AL RPGR DR++ +  PD  GR
Sbjct: 292 -EVERRMVAQLLTLMDGLESRGQLVILAATNRPDSIDMALRRPGRLDREITIGIPDRHGR 350

Query: 334 ERILKVHVRNVPLAPNVDLKILARGTPGFSGADLMNLVNEAALMAARRNKRVVTMQEFED 393
             IL++H RN+PL P+            +  +D+++++NE              + E++ 
Sbjct: 351 NEILQIHTRNMPLQPD------------YEKSDVISILNE-------------LVGEYDR 385

Query: 394 AKDKIMMGAERRSSAMTEAEKKL 416
           +K + ++    ++S+  E EK L
Sbjct: 386 SKIESLVKLVEKASSEEEIEKIL 408