Pairwise Alignments

Query, 681 a.a., penicillin binding protein from Agrobacterium fabrum C58

Subject, 835 a.a., penicillin-binding protein 1A from Vibrio cholerae E7946 ATCC 55056

 Score =  117 bits (292), Expect = 3e-30
 Identities = 76/225 (33%), Positives = 117/225 (52%), Gaps = 5/225 (2%)

Query: 34  EVLDRDGKLLRAFATPDGRWRLKTTAAEVDPQFLRMLVAYEDQRFYDHHGVDPWALLRSA 93
           +V  +DGKL+  F     + R+     E+  + +  ++A ED R+Y+H+G DP  + R+A
Sbjct: 59  QVFSQDGKLIAQFGE---KRRIPLKLEEMPKELIEAVIATEDSRYYEHYGFDPIGITRAA 115

Query: 94  WQLASNGRIVSGASTLSMQVARLIEPRADRSFSAKFLQAARALQIERRLDKAEILDLYLN 153
           + + ++G    GAST++ Q+AR      ++    K  +   A+ IE+ L K EIL+LYLN
Sbjct: 116 FAVLASGSASQGASTITQQLARNFFLSNEKKVMRKVKEIFIAIHIEQLLSKQEILELYLN 175

Query: 154 IAPYGGNLEGVRAASLAWFGKEPGRLDTAEAALMVALPQLPEKRRPDRFPEAAKQARERV 213
               G    GV AA+ A+FGKE   L   E AL+  LP+ P    P    E A   R  V
Sbjct: 176 KIYLGYRSYGVGAAAQAYFGKEVKDLTLGEIALIAGLPKAPSTMNPIYSVERATNRRNVV 235

Query: 214 LQRLAVERVV--GEGEAERAALAAVPVNRRDLPSYAPHMAVAARA 256
           LQR+  E+ +   E +A RA       +  ++   AP++A  ARA
Sbjct: 236 LQRMLDEKYITKAEYDAARAEPVLPKYHGAEIELNAPYVAEIARA 280



 Score = 64.3 bits (155), Expect = 2e-14
 Identities = 52/167 (31%), Positives = 79/167 (47%), Gaps = 15/167 (8%)

Query: 292 SVAIVMADAQTGDILAEVGSADYLDTARRGFVEMSRAVRSPGSTLKPFIYGLAFEDGLVG 351
           + A V  + + G + A VG  +++      F   +++VR  GS++KPFIY  A   GL  
Sbjct: 442 NTAFVAMNPENGAVTALVGGFNFVHNK---FNRATQSVRQVGSSIKPFIYSAALNKGLT- 497

Query: 352 QETIIEDRP------ADFSGYRPRNFDMHYQGDVSIRQALQLSLNVPAVKLLDAVSPSAL 405
             T+I D P      +  + +RP+N    Y G   +R  L  S NV AV++L  V     
Sbjct: 498 LATLINDAPINQWDESQGTAWRPKNSPPTYTGPTRLRIGLAQSKNVMAVRVLREVGLDET 557

Query: 406 MVRFRRAGVKL-VLPANEAPGLAIALGGAGISLVDLVQLYAGLAGSG 451
                R G KL  LP +E     IALG   ++ V + Q ++  A +G
Sbjct: 558 REYLTRFGFKLDQLPRSE----TIALGAGSLTPVQMAQGFSVFANNG 600



 Score = 32.0 bits (71), Expect = 1e-04
 Identities = 17/39 (43%), Positives = 22/39 (56%)

Query: 494 MKQRGIAYKTGTSYGYRDAWSVGYDGRHVIGIWVGRADN 532
           +K+R I  KTGT+   +DAW  GY    V   WVG  D+
Sbjct: 691 LKRRDIGGKTGTTNDSKDAWYNGYAPGIVGVAWVGFDDH 729