Pairwise Alignments

Query, 1520 a.a., polyketide synthase from Agrobacterium fabrum C58

Subject, 1963 a.a., multi-domain beta-ketoacyl synthase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  200 bits (508), Expect = 1e-54
 Identities = 159/515 (30%), Positives = 237/515 (46%), Gaps = 43/515 (8%)

Query: 39  RVAIIGLAGRFPGADDIDAFWQLLADGGSGLTAVTDADLESAGVDPQ-LAGQPD-YVRVW 96
           ++AI+GLA ++P AD  + FWQ L D     + +  A L +   D Q + GQ D +    
Sbjct: 30  KIAIVGLAVQYPDADTPEQFWQNLLDKKDSRSQIDAAKLNANPADYQGIQGQADRFYCDK 89

Query: 97  GGFSDPTAFDAGFFGYAPREAQLLDPQQRVFLECAWNALEHAGYG-SGKSRGRTGVYAG- 154
           GG+     FD   +   P     LD      L+C+  AL +AG   +     RTG+  G 
Sbjct: 90  GGYIRNFRFDPQGYQLLPATFAGLDESFLWALDCSKKALLNAGVDLTAPLLERTGIVMGT 149

Query: 155 -----GSLNYHFTHIHSD------------------PTLRDSVAPLQAGLGNVSGMIASR 191
                   N  F  I+                    P    S+A  Q     V    AS+
Sbjct: 150 LSFPTARSNELFLPIYHQAVEKALKTKLNQPQFALAPFANASIAGSQLAANGVIAHTASK 209

Query: 192 VAYH-LDLDGPSVGVQATCATGLVSVHLAVQALLSGECEMAVAGAVSVGQPKPAGYLYEA 250
           +    L L G  + + A CA+ + ++ LA   L +G+ +M +AGAVS   P      +  
Sbjct: 210 LLSDALGLGGAQLSLDAACASSVYALKLACDYLTTGKADMMLAGAVSGADPFFINMGFSI 269

Query: 251 GGIGAPDGQCRPFDAAANGTIFTNGVGAVILKRLGDAKAAGDTVYAVIAGSAIGNDGSSK 310
                  G   PFD+ + G     G G ++LKRL DA+  GD +YAV++G  + NDG  +
Sbjct: 270 FHAYPDHGISAPFDSNSKGLFAGEGAGVLVLKRLEDAERDGDNIYAVVSGIGLSNDGKGQ 329

Query: 311 VGLTAPSVKGQASVLKKALANAGIAPSAVDYVEAHATATAIGDPIELTALNRIYGPSLRA 370
             L +P+ KGQ    ++A A A   PS ++ +E HAT T +GD +ELT++ R +   L  
Sbjct: 330 FVL-SPNSKGQVQAFERAYAAANTHPSNIEVIECHATGTPLGDKVELTSMERFFEDKLDG 388

Query: 371 EGRICLIGSLKGNVGHMDAAAGIGGLIKTVLALRHECLPASGNFTTPSSACDFESGPFRV 430
             +  LIGS K N+GH+  AAG+ G++K + A+R   LP S N T P S+         +
Sbjct: 389 T-KAPLIGSAKSNLGHLLTAAGMPGIMKMIFAMRSGHLPPSINLTAPISSPKGLFSVNNL 447

Query: 431 AAGKSDW--KADADRPRRAAISAFGMGGSNAHVIIEEAPARQQSAQGEAGALLLPLSARS 488
              +  W  KA  DR R A +S FG GG NAH+++E       SA+ +A     P+  + 
Sbjct: 448 PTQRQAWPDKAGNDR-RHAGVSVFGFGGCNAHLLLESYQPTAHSAEKQANK---PVYQQQ 503

Query: 489 AASLAAMQSSLSDALAKIGENEGVSVADVALTLQT 523
           A ++  M S         G    ++  D AL  QT
Sbjct: 504 ALTVIGMAS-------HFGPLASINALDKALIAQT 531



 Score = 40.0 bits (92), Expect = 2e-06
 Identities = 88/408 (21%), Positives = 150/408 (36%), Gaps = 55/408 (13%)

Query: 36  QDERVAIIGLAGRFPGADDIDAFWQLLADGGSGLTAVTDADLESAGVDPQLAGQPDYVRV 95
           Q + + +IG+A  F     I+A  + L         +     +     P +  Q    R 
Sbjct: 501 QQQALTVIGMASHFGPLASINALDKALIAQTDAFIPLPPKRWKGLDKHPDILQQFGLNRA 560

Query: 96  -WGGFSDPTAFDAGFFGYAPREAQLLDPQQRVFLECAWNALEHAGYGSGKS--------- 145
             G + +   FD   F   P E   L  QQ + ++ A  A+  A   +G           
Sbjct: 561 PKGAYIEQFDFDFLRFKVPPNEDDRLISQQLLLIKVADEAIRDAKLTAGSKVAVLVAMET 620

Query: 146 -------RGRTGVYA--GGSLNYHFTHIHSDPTLR------DSV---APLQAGLGNVSGM 187
                  RGR  ++     SL     H+ +D  L       DSV   A L      +  +
Sbjct: 621 ELELHQFRGRVNLHTQLADSLKKQGVHLSNDEYLALEAIAMDSVLDAAKLNQYTSFIGNI 680

Query: 188 IASRVAYHLDLDGPSVGVQATCATGLVSVHLAVQALLSGECEMAVAGAVSVGQPKPAGYL 247
           +ASR+A   D +GP+  + A   +    + +A   L     +  V  AV +        L
Sbjct: 681 MASRIASLWDFNGPAFTISAAEQSVARCIDVAQNLLSKEALDGVVIAAVDLSGSVEQVIL 740

Query: 248 YEAGGIGAPDGQCRPFDAAANGTIFTNGVGAVIL--KRLGDAKAAGDTVYAVIAGSAIGN 305
             A      D      ++A        G GA++L  ++  +++ AG   Y  I G A G 
Sbjct: 741 KNAQVAVDLDA-----NSANPQWKVGEGAGAIVLTNQQASNSQQAG---YGQIRGQAFGT 792

Query: 306 DGSSKVGLTAPSVKGQASVLKKALANAGIAPSAVDYVEAHATATAIGDPIELTALNRIYG 365
           +      L        + + + A+AN  + P+A+  +E       I    +L A + +  
Sbjct: 793 NHQLPKLL-------DSLITETAIANPSM-PTAIHMIEQ-----CIAPEEQLPAEHLL-- 837

Query: 366 PSLRAEGRICLIGSLKGNVGHMDAAAGIGGLIKTVLALRHECLPASGN 413
             L   G  C    +   +GH  AAAG+  L+  +L+L++    +  N
Sbjct: 838 AQLNLLGTSC--NRVANTLGHNFAAAGMASLLSALLSLKNRSANSDKN 883