Pairwise Alignments

Query, 754 a.a., vgrG protein from Agrobacterium fabrum C58

Subject, 1017 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

 Score =  256 bits (653), Expect = 5e-72
 Identities = 195/637 (30%), Positives = 307/637 (48%), Gaps = 60/637 (9%)

Query: 80  GGVRRPFNGLVTELHEGPPITRGMRSYALTIRPQMWLLSRRSDCRIWMDKTAVEIVETLF 139
           G V +  NG+V +L +G    R    Y+LT+ P +  LS RS+ RI+  ++  EI+  L 
Sbjct: 73  GQVVQQINGIVRQLSKGDTGHRHT-FYSLTLVPALERLSLRSNSRIFQQQSVPEIISILL 131

Query: 140 SEHGIPAPDTSGIISPPPAQH-YSVQFNETDLDYLTRRFEEDGLFYWFSHEDGSHKLHVA 198
            E GI   D +  +    AQ  + VQ+ ETDL +L R   E+GL Y   HE   H L   
Sbjct: 132 QEMGIE--DYAFALKRECAQREFCVQYRETDLQFLHRIAAEEGLVYSHLHEAQKHTLLFT 189

Query: 199 DSASGWLGPSPAAQGEGTVRLAQGSSDRNHINDWARRFSYVSGQRAGADWNFETP--GMV 256
           DS+         A+      LA G  +  ++ D   + +         D++F+ P  G  
Sbjct: 190 DSSDS---QPKLAKPVPYNALAGGEINLPYVVDLQFKTTAQVSHTELKDYSFKKPAYGFT 246

Query: 257 PGTMTPSLV-QMPDATKRELYEYPARIKTVEEAERAQKLRTQSIEADHDRVFGSSTTRIL 315
             T    +  Q P+    E ++ P R K     +   ++R + +  D       S   +L
Sbjct: 247 QRTQGKDIAYQQPNY---EHFDAPGRYKDDANGKAFSQIRLEYLRRDALLADAKSDEPLL 303

Query: 316 EAGRRFTPFEVAHPEHAYE-EHVIVRASHSIVD---LSYETNSNEPEYRNHFEAIPARVP 371
            AG RF   +  H +HA   + ++V+A+H       L  E  S    Y N  + IPA + 
Sbjct: 304 LAGVRFDLQD--HLDHAMNRDWLVVQANHQGTQPQALQEEGGSGATTYSNQLKLIPAHIT 361

Query: 372 LTPHRSTKRPRIEGTQVAIVAGPEGEEIHPDQYGRIKLWFPWDRKAKKDGTDTCWVRVSQ 431
               R   +P+++G  +A V GP+GEEI+ D +GR+K+ FPWDR +  +   +CWVRV+Q
Sbjct: 362 WRA-RPCAKPQVDGPMIATVVGPQGEEIYCDNFGRVKVHFPWDRYSSSNEKSSCWVRVAQ 420

Query: 432 AWGGGTWGAQVIPRIGMEVMVAFVDGDPDKPLVIGVVNNPANSVPYDLPANKTRMVLRSN 491
            W G  +G+  IPR+G EV+V+F++GDPD+P++ G   +  N+ PY LP +KT+ VLR+ 
Sbjct: 421 EWAGSQYGSMAIPRVGHEVIVSFLNGDPDQPIITGRTYHATNTAPYALPDHKTKTVLRTE 480

Query: 492 SHKGDGFNEITFEDEAGKENQFFHAQK----------------DQTTRVLNDRTKRIDRH 535
           +H+G G+NE++FED+AG E    HAQK                DQ   V NDR  RI R+
Sbjct: 481 THQGQGYNELSFEDQAGSEQILLHAQKDWDALIEHDHTEVIRHDQHLTVDNDRFTRIQRN 540

Query: 536 EVASVGGNRAVEVSGNQKHEIGGSVNTVVGGTGPMAMMAMAGVQALSGQTAGLLSQAAQI 595
           +  +V G    +++ +  HE+G S+   VG            +   +G+   L S A  +
Sbjct: 541 QHLTVEGEVRSKIALDSSHEVGASLQHKVG----------QRIAVEAGKEISLKSGAKIV 590

Query: 596 AGSGGPGVAAFATTLASSALGFLGAGGLSSREGVVSGPSPRADAGTALAGSGSGVGSDAS 655
             +G     A  T  A  +   + AGG+      + GP+   +AG + AGSGS  G   +
Sbjct: 591 VEAG-----AELTLKAGGSFVKVDAGGVH-----LVGPAINLNAGGS-AGSGSAYGGQLA 639

Query: 656 GLFPLPGIMNTIVSTFKSDSVGVARAEQIGVSKVTNV 692
               +      +    + D   +A + Q G ++V +V
Sbjct: 640 AAPRMLAQAKPVAELVQPD---IAASMQSGAARVIDV 673



 Score = 26.2 bits (56), Expect = 0.009
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 676 VGVARAEQIGVSKVTNVGQTSLESVGKFKKIAVGEEFVIECGDSKFIMKANGEVI 730
           + +  + ++G S    VGQ      GK   +  G + V+E G ++  +KA G  +
Sbjct: 553 IALDSSHEVGASLQHKVGQRIAVEAGKEISLKSGAKIVVEAG-AELTLKAGGSFV 606