Pairwise Alignments

Query, 331 a.a., site-specific tyrosine recombinase XerD from Agrobacterium fabrum C58

Subject, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

 Score =  217 bits (552), Expect = 3e-61
 Identities = 130/316 (41%), Positives = 187/316 (59%), Gaps = 22/316 (6%)

Query: 10  DGARLESFLEMMSAERGAAANTLSSYEHDLADLREFLGRRGQSLTEAQTPDLSAYLTHLA 69
           D   +E FL+ M  ERG A NT++SY +DL+ L E++ +    L       L  Y + L+
Sbjct: 8   DQGLVEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQSWLS 67

Query: 70  AQGFAATSQARRLSSMRQFYRFLYSEGLRGDDPTGIIDAPRKGLALPKTMSVADVNRLLG 129
            Q +  TS+AR LS++R+ +++L+ E +R DDP+ ++ +P+    LPK +S A V  LL 
Sbjct: 68  EQNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEALLS 127

Query: 130 LAAQEAATEGPGQLARIRMHLLLELLYATGMRVSELVSLPVKVLRQEGRFLMIRGKGNKD 189
               ++  E       +R   +LELLYATG+RV+ELVSL ++ +      + + GKG K+
Sbjct: 128 APDPQSPLE-------LRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKE 180

Query: 190 RMVLLSRAAIEAMEKY-EAGRKALSQEKSKAAASQKKTDTAESPWLFPSNSKEGHLPRQV 248
           R+V +   AIE +E + + GR  L  E++             S  +FPS S+   + RQ 
Sbjct: 181 RLVPMGENAIEWIETFLQQGRSLLLGEQT-------------SDIVFPS-SRGQQMTRQT 226

Query: 249 FARDLKDIAIRAGLTASAVSPHVLRHAFASHLLQNGADLRAVQELLGHSDISTTQIYTHV 308
           F   +K  A+ AG+    +SPHVLRHAFA+HLL  GADLR VQ LLGHSD+STTQIYTHV
Sbjct: 227 FWHRIKHYAVIAGIDVEKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHV 286

Query: 309 LEERLQELVQTHHPLA 324
             ERL++L   HHP A
Sbjct: 287 ATERLKQLHNEHHPRA 302