Pairwise Alignments

Query, 331 a.a., site-specific tyrosine recombinase XerD from Agrobacterium fabrum C58

Subject, 311 a.a., tyrosine recombinase XerC from Vibrio cholerae E7946 ATCC 55056

 Score =  144 bits (362), Expect = 4e-39
 Identities = 113/325 (34%), Positives = 170/325 (52%), Gaps = 38/325 (11%)

Query: 14  LESFLEMMSAERGAAANTLSSYEHDLADLREFLGRRGQSLTEAQTPDLSAYLTHLAAQG- 72
           LE F   +  E+G +  T  +Y+  L  + ++L + G  LT     D SA++  L  QG 
Sbjct: 17  LERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLVQVG--LTHWTQLD-SAWVRQLVMQGK 73

Query: 73  ---FAATSQARRLSSMRQFYRFLYSEGLRGDDPTGIIDAPRKGLALPKTMSVADVNRLLG 129
                A+S A RLSS+R F  FL   G    +P   + APRK   LPK + V ++ +LL 
Sbjct: 74  RQGMKASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRTLPKNLDVDEMAQLL- 132

Query: 130 LAAQEAATEGPGQLARIRMHLLLELLYATGMRVSELVSLPVKVLRQEGRFLMIRGKGNKD 189
               E   + P     IR   ++EL+Y  G+R++ELVS+ +K +      + + GKGNK+
Sbjct: 133 ----EVTDDDP---LSIRDRAIMELMYGAGLRLAELVSIDIKDVNLSEGEIRVIGKGNKE 185

Query: 190 RMVLLSRAAIEAMEKYEAGRKALSQEKSKAAASQKKTDTAESPWLFPSNSKEGHLPRQVF 249
           R V  +  A E + K+   R  L+             D+AE+  LF S      L  ++ 
Sbjct: 186 RKVWFAGQAQEWVGKWLKLRSQLA-------------DSAETA-LFVSK-----LGTRIS 226

Query: 250 ARDLKDIAIRAG---LTASAVSPHVLRHAFASHLLQNGADLRAVQELLGHSDISTTQIYT 306
            R ++      G     AS +SPH LRH+FA+H+L++  +LRAVQELLGH +I+TTQIYT
Sbjct: 227 HRSVQKRMAEWGQKQAVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYT 286

Query: 307 HVLEERLQELVQTHHPLAKQGKNLD 331
           H+  + L ++    HP A++ KN D
Sbjct: 287 HLDFQHLAQVYDQAHPRARK-KNKD 310