Pairwise Alignments

Query, 331 a.a., site-specific tyrosine recombinase XerD from Agrobacterium fabrum C58

Subject, 330 a.a., site-specific tyrosine recombinase XerC from Sinorhizobium meliloti 1021

 Score =  129 bits (325), Expect = 8e-35
 Identities = 100/319 (31%), Positives = 148/319 (46%), Gaps = 27/319 (8%)

Query: 12  ARLESFLEMMSAERGAAANTLSSYEHDLADLREFLGR------RGQSLTEAQTPDLSAYL 65
           A    +L  ++ ER  +  T+ +YE D      FL        R   +   +  DL  +L
Sbjct: 33  AERRRWLASLAEERRLSEKTVDAYERDTRQFLTFLTGHLAGPPRLSDICALRPADLRGFL 92

Query: 66  THLAAQGFAATSQARRLSSMRQFYRFLYSEGLRGDDPTGIIDAPRKGLALPKTMSVADVN 125
                 G  A +  R L+ +R F R+L   GL      G + +P++  +LPK ++  +  
Sbjct: 93  AQRRKGGAGARTLGRGLAGLRSFLRYLERNGLANAAGAGAVRSPKQPKSLPKALTDREAL 152

Query: 126 RLLGLAAQEAATEGPGQLARIRMHLLLELLYATGMRVSELVSLPVKVLRQEGRFLMIRGK 185
           +++   AQ A  E P   AR     +L LLY  G+R++E + L           L + GK
Sbjct: 153 KVVTADAQLA--EEPWIAARNAA--VLTLLYGCGLRIAEALDLTPADFSGPVTSLRVTGK 208

Query: 186 GNKDRMVLLSRAAIEAMEKYEAGRKALSQEKSKAAASQKKTDTAESPWLFPSNSKEGHLP 245
           G K R+V +  AA EA+E Y   RK                   E P      ++   L 
Sbjct: 209 GGKTRIVPMIAAAAEAVETY---RKLCPYHIEP-----------EEPIF--RGARGAKLQ 252

Query: 246 RQVFARDLKDIAIRAGLTASAVSPHVLRHAFASHLLQNGADLRAVQELLGHSDISTTQIY 305
             +  R+++ +    GL  SA +PH LRH+FA+HLL  G DLR +QELLGH+ +STTQ+Y
Sbjct: 253 PAIIQREMQKLRAALGLPDSA-TPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVY 311

Query: 306 THVLEERLQELVQTHHPLA 324
           T V   RL E+    HP A
Sbjct: 312 TGVDSARLLEIYDRAHPRA 330