Pairwise Alignments

Query, 260 a.a., xylose ABC transporter ATPase from Agrobacterium fabrum C58

Subject, 502 a.a., ribonucleotide-diphosphate reductase subunit alpha from Herbaspirillum seropedicae SmR1

 Score =  169 bits (429), Expect = 8e-47
 Identities = 94/259 (36%), Positives = 151/259 (58%), Gaps = 8/259 (3%)

Query: 8   LVEMRNISISFGGIHAVENASVDLFPGEVVALLGHNGAGKSTLIKILSGAYRRDGGEILI 67
           ++++  I  +FG +  +    +++  GEV ALLG NGAGKSTL+KIL G  R D GEI I
Sbjct: 1   MLQLTGIKKNFGPVTVLRGVDLEVRAGEVHALLGENGAGKSTLMKILCGIVRPDAGEIRI 60

Query: 68  NGEDADIRNPRDAKKYGIETIYQTLAVADNVDAAANLYLGRELKTKWGTLDDVAMEASAR 127
           +G+     + R A   G+  ++Q  ++   +DA  N++L REL+++WG L   AM   A+
Sbjct: 61  DGQPCRFDSYRAAIAGGVGVVFQEFSLIPYLDAVDNMFLARELRSRWGWLQRAAMRRRAQ 120

Query: 128 EVMGRLNPNFRRFKEPVKALSGGQRQSVAIARAILFDARILIMDEPTAALGPQETAQVGD 187
           E++G+L         PV  LS  Q+Q V IA+A+  DARIL++DEPTA L P E   +  
Sbjct: 121 EIIGQLGVAI-PLDVPVCKLSVAQQQFVEIAKALALDARILVLDEPTATLTPAEVEHLFA 179

Query: 188 LVKELKRQGIGIFLISHDIHDVFDLADRVFVMKNGKVVGHARTEDVTKDEVLGMIILGKV 247
           +++ L+ QG+ I  ISH + ++F++ DR+ V+++G  V    T +V +  ++ M++  ++
Sbjct: 180 VMRSLRAQGVAIIFISHHLEEIFEICDRITVLRDGAYVATCATAEVDQARLVEMMVGRRI 239

Query: 248 -------PAGAVAGPGAVV 259
                  PA    G G VV
Sbjct: 240 ENCFPPKPAKGGEGEGEVV 258



 Score = 77.8 bits (190), Expect = 4e-19
 Identities = 59/219 (26%), Positives = 103/219 (47%), Gaps = 5/219 (2%)

Query: 34  GEVVALLGHNGAGKSTLIKILSGAYRRDGGEILINGEDADIRNPRDAKKYGIETIYQTL- 92
           GE++   G  G+G++  +  + GA+     ++ ++G      +P  A + GI  + ++  
Sbjct: 280 GEILGFAGLVGSGRTETVLAMLGAHAALSCKLSMHGVPLRFADPAQALQAGIGLLPESRK 339

Query: 93  --AVADNVDAAANLYLGRELKTKWGTLD-DVAMEASAREV-MGRLNPNFRRFKEPVKALS 148
              +  +     N+ L    K + G L  D   E  A E  M R+       +  V  LS
Sbjct: 340 EQGLITSFSILHNVSLNNYGKYRLGGLFLDRRREQQATEAAMQRVRVKAPGAQVRVDTLS 399

Query: 149 GGQRQSVAIARAILFDARILIMDEPTAALGPQETAQVGDLVKELKRQGIGIFLISHDIHD 208
           GG +Q V IAR I    ++LI DEPT  +     +++  L++E   QG  I +IS ++ +
Sbjct: 400 GGNQQKVVIARWINHAMKVLIFDEPTRGIDVGAKSEIYQLMREFTAQGYSILMISSELPE 459

Query: 209 VFDLADRVFVMKNGKVVGHARTEDVTKDEVLGMIILGKV 247
           V  +ADRV V + G +V     E V  +E++     G++
Sbjct: 460 VVGMADRVCVFRGGGIVATLEGEAVNAEEIMTHATTGRI 498