Pairwise Alignments

Query, 513 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 500 a.a., ribose import ATP-binding protein RbsA from Vibrio cholerae E7946 ATCC 55056

 Score =  364 bits (934), Expect = e-105
 Identities = 195/478 (40%), Positives = 307/478 (64%), Gaps = 5/478 (1%)

Query: 4   QPVFQARNVEKVFPGVRALKGVNLSLQPGSIHALLGENGAGKSTLIKVVTGVHHQSSGQI 63
           Q +     +EK FPGV+AL   +L++ PG + AL+GENGAGKSTL+KV+TG++ + +G I
Sbjct: 3   QAILALSQIEKAFPGVKALDKASLNVYPGRVMALMGENGAGKSTLMKVLTGIYSKDAGSI 62

Query: 64  LVDGQAVRFSNPREAIARGIGVVHQERNLIPRFSIAENIHMEKLGAHYLKPIDYAALNRD 123
              GQ V F  PR++   GI ++HQE NLIP+ +IAENI + +        I +  ++R 
Sbjct: 63  EYQGQPVSFKGPRDSQLAGISIIHQELNLIPQLTIAENIFLGREMTSPFGRILWDEMHRK 122

Query: 124 ARRWLEALNLEIDPATPVSELSVAQMQLVEIAKALSLQSRVLLLDEPTTSLTPSETDNLF 183
           A + L  LN++    T + ELS+ + Q+VEIAKALS +S+V+++DEPT +LT +ET++LF
Sbjct: 123 ADQLLARLNVKHSAKTLLGELSLGEQQMVEIAKALSFESKVIIMDEPTDALTDTETESLF 182

Query: 184 RILRRLRDDGASLVFVSHKLEEVLDICDRVTVLRDGENACESRSMEGLGRQDLVRLMIGR 243
            ++  LR+ G  +V++SH+L+E+ +ICD +TVLRDG+   E R  +      L+ +M+GR
Sbjct: 183 NVINELREQGCGIVYISHRLKEIFEICDDITVLRDGKFIGECRVCD-TNEDGLIEMMVGR 241

Query: 244 AESGGGWRKRAVEHNPMVLELEGVSTAIGHGDVSLSVRKGEIVGLYGLVGAGRTELAKSI 303
            +    + + A +   + LE+ G+ T  G  DVS +++KGEI+G+ GL+GAGRTEL K I
Sbjct: 242 -KLEEQYPRIAAQQGDISLEVIGL-TGSGVHDVSFTLKKGEILGVSGLMGAGRTELMKVI 299

Query: 304 MGKFAVTSGNVRVSGRPARIRSVAEAIHDYGVGYVSEDRKGDGLILQHSVLANAGVPIWR 363
            G      G + ++GR     S  + + + G+ Y+SEDRKGDGL+L  SV  N  +    
Sbjct: 300 YGALPSERGVINLNGRTVNPVSPQDGLAN-GIAYISEDRKGDGLVLGLSVKENMSLCALD 358

Query: 364 KLSNTFGVLSDGRIRAAVTPFLKKLEVKTPSLSQTVGNLSGGNQQKISVAKWLAADVKLL 423
           +LS    +     +  AV  F++   +KTPS  Q +GNLSGGNQQK+++AK L    K+L
Sbjct: 359 QLSKGVQIRHADEV-IAVDDFIRLFNIKTPSREQIIGNLSGGNQQKVAIAKGLMTKPKVL 417

Query: 424 IVDEPSVGIDIKTKAYLHDLLRELADNGTAILVITSDMPEMVALADRIVVMDQYRVKG 481
           I+DEP+ G+D+  K  ++ L+ +    G +I++++S+MPE++ ++DRI+VM + R+ G
Sbjct: 418 ILDEPTRGVDVGAKKEIYQLINQFKAEGMSIILVSSEMPEVLGMSDRILVMHEGRISG 475



 Score = 87.4 bits (215), Expect = 1e-21
 Identities = 65/259 (25%), Positives = 126/259 (48%), Gaps = 30/259 (11%)

Query: 10  RNVEKVFPGVRALKG----------------VNLSLQPGSIHALLGENGAGKSTLIKVVT 53
           R +E+ +P + A +G                V+ +L+ G I  + G  GAG++ L+KV+ 
Sbjct: 241 RKLEEQYPRIAAQQGDISLEVIGLTGSGVHDVSFTLKKGEILGVSGLMGAGRTELMKVIY 300

Query: 54  GVHHQSSGQILVDGQAVRFSNPREAIARGIGVVHQERN---LIPRFSIAENIHMEKL--- 107
           G      G I ++G+ V   +P++ +A GI  + ++R    L+   S+ EN+ +  L   
Sbjct: 301 GALPSERGVINLNGRTVNPVSPQDGLANGIAYISEDRKGDGLVLGLSVKENMSLCALDQL 360

Query: 108 --GAHYLKPIDYAALNRDARRWLEALNLEIDPATPV-SELSVAQMQLVEIAKALSLQSRV 164
             G       +  A++     ++   N++      +   LS    Q V IAK L  + +V
Sbjct: 361 SKGVQIRHADEVIAVDD----FIRLFNIKTPSREQIIGNLSGGNQQKVAIAKGLMTKPKV 416

Query: 165 LLLDEPTTSLTPSETDNLFRILRRLRDDGASLVFVSHKLEEVLDICDRVTVLRDGENACE 224
           L+LDEPT  +       +++++ + + +G S++ VS ++ EVL + DR+ V+ +G  + E
Sbjct: 417 LILDEPTRGVDVGAKKEIYQLINQFKAEGMSIILVSSEMPEVLGMSDRILVMHEGRISGE 476

Query: 225 SRSMEGLGRQDLVRLMIGR 243
             + E   ++ L+   +GR
Sbjct: 477 FMASEA-DQEKLMACAVGR 494