Pairwise Alignments

Query, 325 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  162 bits (409), Expect = 1e-44
 Identities = 100/315 (31%), Positives = 165/315 (52%), Gaps = 13/315 (4%)

Query: 3   TDNTLLRLARTDWF---GPLLVTVMAIVVIRGFSPNFLSSFNIQILLLAISVNALIAFSQ 59
           T +   +L   +W      L+  +  +VV+   +PNF +  N+  +L   SVNA+IA   
Sbjct: 16  TSDNRKKLLSKEWLIEQKSLIALLFLVVVVSFLNPNFFTVDNLLNILRQTSVNAIIAVGM 75

Query: 60  MIIIAIGQMNLSVGAIGGLAAISFAGLMQVWGLPAPVAAIAAMLIGIVCGMLNGLLIAIT 119
            ++I    ++LSVG++  L   +FA  +    +P  VA   A+L G   G ++G++IA  
Sbjct: 76  TLVILTAGIDLSVGSVLALCG-AFAATLVAMEVPVLVAVPTALLAGAALGAISGIIIAKG 134

Query: 120 GISAFVITLATLSIYKGINLGITRAEP----FYGIPESVKDFGSALIVG-PVP-WLAAPT 173
            + AF+ TL T+++ +G+ +  T   P    F    ++   FG+   +G PVP WL    
Sbjct: 135 KVQAFIATLVTMTLLRGVTMVYTDGRPISTGFTDTADTFAWFGTGYTLGIPVPVWLM--- 191

Query: 174 IIVAFALWFMLRRQPIGRFILAIGGNSHAAELSGISVRMTVIVAHGISGFLASVAGILLV 233
           ++V    W++L     GR++ A+GGN  A  LSGI+V    I  + I G LA++AGI++ 
Sbjct: 192 VVVFAGAWYLLNHTRFGRYVYAVGGNESATRLSGINVDRVKIGVYAICGLLAALAGIIVT 251

Query: 234 SRLQIGQPSIGDDWLILSFAAPVIGGAVLAGGHVSVGATLLGVVIVAIITQALVLFSIDP 293
           SRL   QP+ G  + + + AA V+GG  L GG   +  TL+G +I+  +  AL L  +  
Sbjct: 252 SRLSSAQPTAGMGYELDAIAAVVLGGTSLMGGKGRIMGTLIGALIIGFLNNALNLLDVSS 311

Query: 294 FLVQVVLGAMILAAV 308
           +   +    +IL AV
Sbjct: 312 YYQMIAKAVVILLAV 326