Pairwise Alignments

Query, 346 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  145 bits (365), Expect = 2e-39
 Identities = 108/335 (32%), Positives = 172/335 (51%), Gaps = 15/335 (4%)

Query: 8   LTKGVQDAEERMGSSLSQGRFFLTNEFGLILLIVVFAVSFGVAAGGFLSPF-----NLFT 62
           + +G   +   M ++ S  R  L ++  LI    + A+ F V    FL+P      NL  
Sbjct: 1   MKQGYSMSTRTMTNTTSDNRKKLLSKEWLIEQKSLIALLFLVVVVSFLNPNFFTVDNLLN 60

Query: 63  LGRSAAINIMIGLSMMAVIVTGGLNLAVGAIGVSAAMACGYLIEVLGVPWPLALIGGLAT 122
           + R  ++N +I + M  VI+T G++L+VG++ ++   A    +  + VP  +A+   L  
Sbjct: 61  ILRQTSVNAIIAVGMTLVILTAGIDLSVGSV-LALCGAFAATLVAMEVPVLVAVPTALLA 119

Query: 123 GAALGFINGWTVIRTGLHSFIITLATMSIFFGVMIFLTRAE----AYRGLPPIFAAFGKM 178
           GAALG I+G  + +  + +FI TL TM++  GV +  T        +      FA FG  
Sbjct: 120 GAALGAISGIIIAKGKVQAFIATLVTMTLLRGVTMVYTDGRPISTGFTDTADTFAWFGTG 179

Query: 179 KLATYFSPLLLVTLVTALALSFLYRRTVLGREMLASGARPEAAELSGIRVDRIFIACHVL 238
                  P+ L+ +V A A  +L   T  GR + A G    A  LSGI VDR+ I  + +
Sbjct: 180 YTLGIPVPVWLMVVVFAGAW-YLLNHTRFGRYVYAVGGNESATRLSGINVDRVKIGVYAI 238

Query: 239 SGLLAALAALMLVTRTGAAIPSMAGQLGQDWLLPAFLGPVLGGTLLQGGKVSVLGTCLGA 298
            GLLAALA +++ +R  +A P+     G  + L A    VLGGT L GGK  ++GT +GA
Sbjct: 239 CGLLAALAGIIVTSRLSSAQPTA----GMGYELDAIAAVVLGGTSLMGGKGRIMGTLIGA 294

Query: 299 LLVTMLTSGLLLLQLGEFWVQTFLGLLLLLAVLMD 333
           L++  L + L LL +  ++      +++LLAVL+D
Sbjct: 295 LIIGFLNNALNLLDVSSYYQMIAKAVVILLAVLVD 329