Pairwise Alignments

Query, 295 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 260 a.a., ABC transporter permease from Methanococcus maripaludis S2

 Score =  108 bits (270), Expect = 1e-28
 Identities = 64/225 (28%), Positives = 120/225 (53%), Gaps = 4/225 (1%)

Query: 56  STITHPDTRHAIMLTVLTALIAVPVNTAFGVAAAWAITKFDFPGRRFLLVLIEIPFSISP 115
           S+I +P+  +++ +++ ++LI+  +   F +   +AI+++ FPG+  +  ++++P +   
Sbjct: 39  SSIFNPEMIYSLKVSLYSSLISTGIVLGFSIPTGYAISRYSFPGKSIVKAILDLPIAFPE 98

Query: 116 IVAGVAYLFVYGLQGLFGPFLDAHDIKILFALPGIVIASMFVTAPFVARELIPLMQAQGR 175
           +V G+A L ++G Q   G  L+   IK++F   GIV+A +F   P+  R +    Q    
Sbjct: 99  LVLGLALLLLFG-QTFIGDILEFFGIKVVFTKLGIVVAQIFTALPYAIRIVCSTFQDINP 157

Query: 176 DLEEAATSLGASGWRTFFSVTLPNIKWALLYGVVLCNARVMGEFGAVSVVSGNIRGQTNT 235
             E  + SLG S + TF +VTLP  +  +    ++  AR MG FG V +++G     T T
Sbjct: 158 RYELVSRSLGYSEFETFKNVTLPMARSGIFASSIIAFARCMGTFGTVLMLAGGTYMYTET 217

Query: 236 LPLHIELLYHDYQTAGAFASASILALLAVVTIIAKVALERRGAGR 280
           LP+ +  L   Y   G   S+ I+ L+  ++ IA +  E+   G+
Sbjct: 218 LPITL-YLNMSYGNLGMAISSGIVLLM--ISFIAILIFEKYEGGK 259